Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01568 ATGGCGGTCGATAAACTTCTGAAAGATGAAGCGAGCGAAGAGAAGGGAGAGCGTGCTAGAATGGCATCATTCATTGGTGCTATGGCGATTGCGGATTTGGTTAAGACAACATTAGGACCAAAGGGGATGGATAAAATTCTCCAATCTACTGGCAGAGGAAGGCAAGTCACTGTCACCAATGATGGTGCCACCATTTTAAAGTCTCTCCATATCGATAATCCAGCTGCCAAAGTGCTTGTCGGTATCCTTTATGTCAGTATTTACCATGTTTATGATCGAGGCGATTTCATGATTATTGTAGTTTCAGAAGACATTTCAAAAGTTCAAGATGATGAAGTGGGTGATGGCACAACCTCAGTTGTTGTTTTGGCTGGAGAACTTCTAAGGGAAGCAGAGAAGTTGGTTGCTTCAAAGATTCATCCAATGACAATTATAGCAGGTTATAGAATGGCTGCAGAATGTGCCCGTAATGCATTGCTGCAGAAAGTGGTGGATAACAAATCAGATTTAGAGAAATTTAAATCAGACTTGATGAAGATTGCAATGACTACTCTGAGTTCCAAAATTCTATCACAAGACAAGGAACATTTTGCTCAATTGGCAGTGGATGCCGTTATGAGGCTAAAGGGGAGCACAAACTTGGAGTCAATTCAAATCATCAAGAAACCTGGAGGATCGTTGAAGGATTCCTTTTTAGATGAAGGGTTTATTCTTGACAAAAAAATTGGTATTGGCCAACCCAAGCGCATAGAGAATGCCAAAATTTTAGTGGCAAATACTGCTATGGACACCGACAAAGTCAAGATTTATGGTGCTCGAGTTCGAGTTGATTCAATGGCAAGAGTTGCTGAAATTGAGGGTGCTGAAAAGGATAAAATGAGAGAGAAGGTGAAGAAGATAATTGGTCATGGAATCAACTGCTTTGTTAACAGACAGTTGATCTACAATTTCCCGGAGGAACTATTTGCAGATGCAGGAATACTTGCCATTGAGCATGCTGATTTTGATGGCATAGAGCGTCTGGCTTTAGTAACTGGTGGTGAGATTGCTTCAACTTTTGACAATCCGGAATCTGTGAAGCTTGGACATTGCAAGTTGATTGAGGAGATTATGATTGGCGAGGACAAACTGATCCATTTTTCTGGTGTGGGAATGGGTCAGGCGTGTACAATTGTGCTAAGGGGTGCAAGTCATCACGTCCTTGATGAGGCTGAAAGGTCTCTGCATGATGCCTTGTGTGTACTGTCTCAGACAGTCAATGACAGCAGAGTCCTGCTTGGAGGTGGATGGCCCGAGATGATTATGTCAAAAGAAGTAGATGAGTTGGCTAGGAAGACTCCTGGGAAGAAATCACACGCCATTGAAGCTTTTTCACGTGCTCTACAGGCTATTCCAACAATCATTGCTGATAATGCTGGGTTGGATAGTGCTGACTTGATTGCACAGCTCCGGGCTGAGCATCACAAGGAAGGTTGCAATGCAGGGATCGACGTCATCTCTGGTTCGGTAGGGGATATGGCTGAACTTGGTATCTCAGAAGCTTTCAAAGTGAAGCAAGCCGTATTGCTTTCTGCAACGGAGGCTGCTGAGATGATTCTTAGAGTTGATGAAATCATCACATGTGCCCCTAGGAGGAGAGAAGATAGAATGTGA 1653 43.25 MAVDKLLKDEASEEKGERARMASFIGAMAIADLVKTTLGPKGMDKILQSTGRGRQVTVTNDGATILKSLHIDNPAAKVLVGILYVSIYHVYDRGDFMIIVVSEDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMAAECARNALLQKVVDNKSDLEKFKSDLMKIAMTTLSSKILSQDKEHFAQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMARVAEIEGAEKDKMREKVKKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVGMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMIMSKEVDELARKTPGKKSHAIEAFSRALQAIPTIIADNAGLDSADLIAQLRAEHHKEGCNAGIDVISGSVGDMAELGISEAFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13050626 13055277 - Carg21387-RA Car01g01568 142432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01568 550 ProSitePatterns Chaperonins TCP-1 signature 1. 35 47 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Car01g01568 550 ProSitePatterns Chaperonins TCP-1 signature 2. 58 74 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Car01g01568 550 ProSitePatterns Chaperonins TCP-1 signature 3. 109 117 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Car01g01568 550 Pfam TCP-1/cpn60 chaperonin family 30 540 IPR002423 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01568 K09494 CCT2; T-complex protein 1 subunit beta - csv:101206611 984.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01568 Car-Chr1:13050626 Car13g00046 Car-Chr13:370491 0 dispersed
Car20g00908 Car-Chr20:9833626 Car01g01568 Car-Chr1:13050626 3.02E-48 dispersed
Car01g01568 Car-Chr1:13050626 Car11g00682 Car-Chr11:3815410 1.44E-94 transposed
Car01g01568 Car-Chr1:13050626 Car04g02957 Car-Chr4:22191567 1.17E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g138 Blo01g01618 . . . Bpe02g00326 . . Bma01g02393 . . Cma01g01996 . Car01g01568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00955 . . . . . . Cmo01g02057 . . . . . . Cpe02g00049 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005792 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 3 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01568 Car_Chr01 FPKM 63.44355 68.834396 7.145153 5.832923 9.712472 12.484784 7.819709 0.0 0.216905 0.0