Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01572 ATGGCGGAACACGGCGGCGAAATAGATCCAAGAAGCGGGTTCTGCAAATCCACCAAAATCTTCCACAGCAAGCGCCACCCAATCCCTCTCCCCCCGAACCAATCACTCGATGCGACCACCTTCATCTCTTCCCGCCCTCACAACGGCAAAATCGCCCTCATCGACGCCACCACCGGCCAACACATCACCTATTCCCACCTCTGGGAAGCCGTCGATTCCGTCGCCTCTGCTCTCTCCGACATGGGAATCCGAAAAGGCCACGTCATCCTCCTCCTCTCCCCTAACTCCATTTTCTTCCCCATCATTTGCCTCGCCGTCATGTCCATCGGCGCCATCATCACCACCACAAATCCCCTCAATACTCCCCAAGAAATCGCCAAGCAGATCGCCGATTCAAAACCCATTTTAGCTTTCACAACCCAACAATTACTCCCCAAAATCGCCAGCTCCAAATTGCCAATCGTCCTTATTGACAGCCAAATTCAAACCCCCTCAGTCAAAATCGTATTCACGTTGAACGAAATGATGAGGAAAAAACCCAGTGAGAGTAGAATCAAAGAACGGGTTGAGCAAAACGACACAGCGACTCTGCTTTATTCGTCTGGAACGACAGGGGCGAGCAAGGGCGTAGTGTCGTCTCATAAAAATTTAATTGCGATGGTTCAAGTGGTTGTGACGAGGTTCAGATTAAGCGAAGGGGAAGGGACTTTTATCTGTACGGTTCCGATGTTTCATATCTATGGACTCGTGGCCTTCGCGACGGGGCTGCTGTCTTCAGGATCCACGATCATCGTCTTGTCCAAATTCGAAATTCATGAGATGTTGTCTGCGATTGAGAAGTACAGGGCAACGTATCTGCCACTTGTGCCCCCGATTCTAGTGGCGCTAGTGAACGCCGCCGAGCAGATAAAGGGCAAGTACGATTTGAGCTCCTTGCACACGGCGTTGTCCGGCGGAGCGCCGCTGGGGAAGGAGGTCATTGAGGGTTTTGTTGAGAAATATCCGAATGTTGCGATTCTTCAGGGGTATGGGTTGACGGAGTCCACCGGAATAGGAGCTTCCACTGATTCTCTGGAGGAGAGCCGCCGGTATGGCACGGCGGGGCTTTTGTCTCCGAGCACTGAGGCAATGATTGTTGACCCGGAAACTGGCGAGCCTCTGCCCGTGAACCGGACCGGAGAGCTTTGGCTCAGAGGACCCACCGTTATGAAAGGGTATTTTGGTAATGTGGAGGCCACAGCCTCAACGCTCGACTCAAAGGGATGGTTGAGAACGGGCGATCTGTGTTACATCGATCAAGATGGTTTTATTTTTGTGGTTGATAGGCTCAAAGAACTCATCAAATACAAGGGTTATCAGGTGCCTCCAGCCGAATTAGAGGCGTTATTACTCACACATCCTAATATCTCTGATGCAGCTGTGATCCCTTTTCCAGACAAGGAGGTTGGGCAGTATCCAATGGCCTACGTGGTAAGAAAGGGTGGAAGTGACATTTCACATGAAGACGTAATGCAATTCGTGGCAAAACAGGTGGCGCCGTACAAGAGAATCCGGCGGGTGGCTTTTGTGGATTCCATTCCCAAAAATCCGTCCGGTAAGATTTTGAGAAAGGATCTCATAAAGCTTGCAACCTCTAGACTTTGA 1644 50.91 MAEHGGEIDPRSGFCKSTKIFHSKRHPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQHITYSHLWEAVDSVASALSDMGIRKGHVILLLSPNSIFFPIICLAVMSIGAIITTTNPLNTPQEIAKQIADSKPILAFTTQQLLPKIASSKLPIVLIDSQIQTPSVKIVFTLNEMMRKKPSESRIKERVEQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFRLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIIVLSKFEIHEMLSAIEKYRATYLPLVPPILVALVNAAEQIKGKYDLSSLHTALSGGAPLGKEVIEGFVEKYPNVAILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEAMIVDPETGEPLPVNRTGELWLRGPTVMKGYFGNVEATASTLDSKGWLRTGDLCYIDQDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPNISDAAVIPFPDKEVGQYPMAYVVRKGGSDISHEDVMQFVAKQVAPYKRIRRVAFVDSIPKNPSGKILRKDLIKLATSRL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13071467 13074962 - Carg21383-RA Car01g01572 142436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01572 547 Pfam AMP-binding enzyme 47 449 IPR000873 -
Car01g01572 547 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Car01g01572 547 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01572 Car09g00060 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01572 Car-Chr1:13071467 Car09g00060 Car-Chr9:292585 0 dispersed
Car02g01229 Car-Chr2:8315583 Car01g01572 Car-Chr1:13071467 5.70E-60 dispersed
Car15g01008 Car-Chr15:7883481 Car01g01572 Car-Chr1:13071467 2.74E-63 dispersed
Car20g00046 Car-Chr20:267137 Car01g01572 Car-Chr1:13071467 3.27E-19 dispersed
Car01g00468 Car-Chr1:2731620 Car01g01572 Car-Chr1:13071467 1.38E-156 transposed
Car02g00325 Car-Chr2:2248432 Car01g01572 Car-Chr1:13071467 8.42E-12 transposed
Car03g01311 Car-Chr3:10001897 Car01g01572 Car-Chr1:13071467 1.60E-24 transposed
Car04g01470 Car-Chr4:8519237 Car01g01572 Car-Chr1:13071467 7.44E-161 transposed
Car05g00611 Car-Chr5:3625899 Car01g01572 Car-Chr1:13071467 1.66E-94 transposed
Car14g00203 Car-Chr14:969482 Car01g01572 Car-Chr1:13071467 1.81E-144 transposed
Car17g00065 Car-Chr17:369165 Car01g01572 Car-Chr1:13071467 1.79E-20 transposed
Car18g00637 Car-Chr18:7678813 Car01g01572 Car-Chr1:13071467 8.42E-119 transposed
Car01g01572 Car-Chr1:13071467 Car16g01194 Car-Chr16:10110298 5.93E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01572 K10526 - csv:101221396 982.63