Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01579 ATGGCGGAGCAGGAGAAAGAGAGGAATAAGTACAGTTTAATTGTCCCAACCTACAACGAGCGCCTCAATATTGCTCTTCTTGTTTTCCTCATTTTCAAGCACCTCCCGGATGTTGATTTTGAAGTAATTGTCGTTGATGATGGAAGTCCTGATGGTACTCAAGAAGTTGTGAAAGAGTTGCAAGGGGTATATGGTGAAGATCGCATTCTATTGAGAGCCAGACCTAGGAAGCTTGGCTTAGGAACGGCTTACTGTCACGGTCTCAAGCATGCAAGTGGTAATTTTGTTGTTATAATGGATGCTGATTTATCCCACCATCCCAAATATTTACCAAGCTTCATTCGGAAACAGTTACAAACGGGTGCTGATATAGTTACAGGCACCCGATATGTGAAAGGTGGCGGTGTGCATGGATGGAATCTTATGCGCAAACTAACAAGTAGAGGAGCTAATGTTCTTGCCCAAACACTTTTATGGCCTGGTGTATCAGATTTAACTGGATCTTTCCGGCTCTACAAGAAATCGGTGCTTGAAGATATCATTAGTTCAGTTGTTAGCAAGGGATATGTCTTTCAAATGGAGATGATTGTTCGAGCTACAAGAAAAGGCTATCACATTGAAGAGGTTCCAATAACCTTTGTTGATAGAGTGTTTGGAATTTCCAAGCTTGGAGGATCTGAAATAGTAGAGTATTTGAAAGGTCTGTTGTACCTTTTGGTCACCACATGA 729 41.7 MAEQEKERNKYSLIVPTYNERLNIALLVFLIFKHLPDVDFEVIVVDDGSPDGTQEVVKELQGVYGEDRILLRARPRKLGLGTAYCHGLKHASGNFVVIMDADLSHHPKYLPSFIRKQLQTGADIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKSVLEDIISSVVSKGYVFQMEMIVRATRKGYHIEEVPITFVDRVFGISKLGGSEIVEYLKGLLYLLVTT 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13097975 13101048 - Carg21376-RA Car01g01579 142443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01579 242 Pfam Glycosyl transferase family 2 12 180 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01579 K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] - csv:101222489 466.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01579 Car09g00051 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01579 Car-Chr1:13097975 Car04g02546 Car-Chr4:20130901 4.81E-09 dispersed
Car04g01094 Car-Chr4:6306410 Car01g01579 Car-Chr1:13097975 3.57E-13 transposed
Car01g01579 Car-Chr1:13097975 Car09g00051 Car-Chr9:257153 2.11E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g112 . . . . . . . . . . . . Car01g01579 . . Cpe06g00027 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g02067 Cmo09g00060 . . . Car09g00051 . . Bhi09g02898 Tan01g5098 . . Hepe01g2335 . . Cla11g01818 Cam11g1884 Cec11g1909 Cco11g1916 Clacu11g2048 Cmu11g1853 Cre11g2258 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008872 1 2 2 1 1 0 2 0 0 1 0 0 0 1 1 3 0 2 2 0 1 2 1 1 1 1 1 2 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01579 Car_Chr01 FPKM 5.701542 7.182538 0.390114 0.323703 5.239443 5.630321 7.606622 0.061269 0.0 0.0