Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01590 ATGGAGTGGGCGAACCAGCAGCAACAGAACAACCAAAGTGAGCAGCAATTGCAAGTGCAAATGCAGGTAGAGCAATTGAGCAACGGCGATGGTGTTGGTGGGCTGTACGTCAAGGTAATGACGGATGAGCAAATGGAGCTCCTCAGGCACCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTCGTGGAGATGCACAAGGCTATCACCGCCCACCAGGACCTTGCCGGAATTAGGGTAGGGAACCTGTACTGCGATCAAATAATGGCATCTGCCGCTGGTCACAAGATAAGCGCTAGGCAGAGGTGGACGCCCACGCCTGTGCAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAACGGGACCCCAAGCAAGCAGAAGATCAAGGAAATAACTCTCCACCTCACACAGCATGGCCAAATTTCAGAAGCAAATGTTTACAATTGGTTTCAGAACAGAAGGGCTCGCTCAAAAAGAAAGCAGGCAAATTCAACACCAAATAATCCAGACTCAGAACCAGACACAGAAGTTGATTCTCCAAAGGACAAAAAGACCAAACCAGAAGAAACCTTCCAAACATATGACCAATTCGTTTCGAATTCCAACAACGTGTATTCTCAGACATCTGATTTAGGCGCTGAAATGCTCGCCTTTGATGCACAATCAAACAAAGGGGACCCCATGTTTCAGTCCTTCGGATCGAGTCATTTAAGTCAGGTGGCCACAGCACAGAATCACAGAAATAATGATAAGATGAACGTACCAGACGGCTACACCCCTTACCATCCTTGCGAAGGATATCCCCTTGGTTGA 816 47.79 MEWANQQQQNNQSEQQLQVQMQVEQLSNGDGVGGLYVKVMTDEQMELLRHQISVYASICEQLVEMHKAITAHQDLAGIRVGNLYCDQIMASAAGHKISARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKEITLHLTQHGQISEANVYNWFQNRRARSKRKQANSTPNNPDSEPDTEVDSPKDKKTKPEETFQTYDQFVSNSNNVYSQTSDLGAEMLAFDAQSNKGDPMFQSFGSSHLSQVATAQNHRNNDKMNVPDGYTPYHPCEGYPLG 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13151809 13153546 + Carg21365-RA Car01g01590 142454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01590 271 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677
Car01g01590 271 PANTHER - 1 238 - -
Car01g01590 271 CDD homeodomain 100 162 IPR001356 GO:0003677
Car01g01590 271 MobiDBLite consensus disorder prediction 155 188 - -
Car01g01590 271 SMART HOX_1 98 165 IPR001356 GO:0003677
Car01g01590 271 MobiDBLite consensus disorder prediction 240 271 - -
Car01g01590 271 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 238 IPR044559 GO:0003700
Car01g01590 271 SUPERFAMILY Homeodomain-like 99 162 IPR009057 -
Car01g01590 271 Gene3D - 102 167 - -
Car01g01590 271 Pfam Homeodomain 100 160 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01590 Car09g00039 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01590 Car-Chr1:13151809 Car06g00127 Car-Chr6:791500 1.47E-91 dispersed
Car01g01590 Car-Chr1:13151809 Car16g01199 Car-Chr16:10130838 9.60E-90 wgd
Car01g01590 Car-Chr1:13151809 Car09g00039 Car-Chr9:199267 1.09E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2914 PF00046 Homeodomain 7.50E-18 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01590 - - bhj:120085747 429.483