Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01591 ATGGATCAGTTCGACGCATTCTTCAGGAGAGCCGATTTGGATGGTGATGGAAGGATTAGTGGAGCTGAAGCTGTCGCTTTCTTTCAGGGCTCCAATTTGTCTAAAAATGTTCTTGCACAGATATGGATGCATGCTGATCAGAGAAAAACAGGTTTTCTTGGGCGACCTGAATTTTATAATGCTCTCAGACTCGTAACTGTTGCTCAAAGTAAGCGAGAGCTAACTCCTGATATTGTTAAGGCAGCACTATATGGTCCTGCTGCAGCGAAAATACCCCCACCAAAGATTGTTCTTCCAGCTGTATCTACCCCTCAATCAACTTCAGTGCCTGCTGCATCTCCTCCACAGATGAGTATGCCTGCACCAACGGCATCTCAAAATTTTGGCTTTAGAGGACAAGGAGTTCCTAGTGTAGGTGTGAATCAGCAGCATATTTCAGCCCAGCCAAACCCTTCCATGAGGTTACCTCAAGCTACACCTGGTGGTGTTGCTTCCAGTACGCAGCTGGTTGTTGCTGCTGCTGAACACTCTGGAGGAGGACACGTACGGAGTTCAAGTCTTCCAAACACAAATGATTGGCTTGGTGGAAGACCAGGTGGTGCCCTTGCTGCTGGGCCTAGAGGAGTTAGCCCTTCAGTGCCTTCCCCAGCTACGTCGTTATCATCAGCTTTAGTGCCTTCTCAGCCTATGCCTAATGATAGAGCACTGGCTGTTTCTGGTAATGGATTTACTTCTAAGTCGGCAATTGGCGCTGACATGTTTTCTATTACTCCATCTCCACATAGACCAGATTCTACCGGACTCAACAATACAGCTAACAGTAGTATTGGCCCATCAGCCATTGTTCCAGTTTCCAGTGTATCCCAACCTTTAAGTCAGCACAAATCGATGGAGTCATTGCAGAGTGCCTTTGTCTCACGGCCATTATCTGGCGCACCGTTACAGCTCTCACAGTCACCCTTACAGCTCTCCCAGTCACCCTTACAGCTCTCTCAGTCATCACTGGAACCTACCAAGGAGGTTAGAGCAACAGGTCCATCACCACTTATATCTTCTGGGATCACAACTGGAGCCAGGAACTCTACTTCTGAAAATACACAGCTTACTTGGCCAAAAATGAAACCAACTGATGTTCAGAAGTACACAAAAGTTTTTATGGAAGTAGACACTGACAGAGACGGTAAAATTACCGGTGAGCAGGCACGGAATCTATTTTTAAGTTGGAGGTTACCTAGAGAGGTCTTGAAGCAGGTGTGGGACTTATCTGATCAAGACAATGACAGCATGCTTTCTCTCAGAGAGTTTTGTTTTGCTTTATATCTAATGGAACGTTACAGGGAAGGTCGACCTCTTCCAGCTGCGCTTCCAAATAATGTTATGTTTGATGAGACTCTGTTGTCCATGACAGGACAACCTAACGTTGTCCACCCAAATGCAGCTTGGGGTCCCCATCCTGGATTTGGACAGCAGCAACCCCAGGTCGCTGCTCGGTCGATGGCACCAACTGCAGGATTGAGGCCCCCAACAAATGTACCTGCTTCGAAGGCTGGTGGTGCTAGACTATCCAATGCGCAGAAATCAAGGACTCCAGTGTTGGAGGATTCATTTCTGGACCAATCTGACAAGAACCAACAGAATTCAGCTAGCCCAAATGCTCAGGATGCTACAGCATCAGAGAAAAAGGCATCTCCTTATATCTATCAGTCAACTTTCATATTATATAATGTTATTTTGGATTCAAGAGAAAAGATTGAATTCTATCGCACAATGATGCAGGAACTTGTTCTGCATAAAAGCAGATGTGATAGCAGATTAAATGAGATCACAGAAAGGGCATCTGCTGACAGGCGTGAGGCAGAAACTTTGGGGAAAAAATATGAGGAGAAGTACAAGCAAGTGGCTGACATAGCATCTAAGTTAACCATTGAAGAAGCAAATTATCGTGATGTTCAAGAAAGGAAGACAGAGCTGCATGAAGCAATTATTAAAATGGAACAAGGAGGAAGTGCTGATGGTATTCTTCAGGTCCGAGCTGATCGAATACAATCTGATATTGAGTTGCTTCTTAAGGCTTTAACTGAACGTTGTAAGAGACATGGAATTGATGTTAAGTCGGCTGCTATGATTGAACTTCCAGTAGGCTGGCAACCTGGAATTGCGGATGATGCAGCTGTTTGGGATGAAGAGTGGGATAAGTTTGAAGATGAAGGATTTTCCAATGATCTCAATCTCGATCCAAAGCGTGTTTCTGCCTCAAAACCAAAAATGTCACGTAGTCTGGATGAAAAGGATCTAGAAGATTTTAACTCAACTCCTGATTCATCGTTCAATGGCCATGACAAAACCAAAGTGGGGATCTTCTCGAGTACCATCAATCATGGCCTTGAGAGTGAATTTATGTATAGCCACAGTGAAGATGAATCAGCTAGAAGTCCATATGGCAGTCCAGCTGCAAAGACATCTCTAGAAAGCCCTCGTGAATTTTCGGATCCTGTTTATGAAAAAAGTCCGGAAGCATATAGTTTCGATGAGTCAGCTTGGGGCGCCTTTGACAACAATGACGATGTGGACTCAGTTTGGGGAATAAAACCAGTTAATACCAAGGAATCAGACGCTGAAAAGCACCGGGATATCTTTGGATCCGGTGATTTCGATACGATCTCTGCTAAAACAGCATCCCCCAATGCAGATAGCTTCTTTCAGACAAAAAGCCCATTTTTTGAGGATTCTGTCCCTCCCACTCCTCTCTCTAGATTCGGCAACTCCTCTTCCCCTCGTTATAGTGATGTGGGGGATCACTTCTTTGACAATTCCTCCAGGTTTGATTCTTTCAGCATGCAGGATCCCAGTTTTTCTCCACAACGCGAGAAGTTCTCCAGGTTCGATTCAATAGGCAGTTCTCAAGACTTTGGCCGTAACCAGGAGAAGTTTTCAAGGTTTGATTCTATCAGTAGTAGCATGGACTTCGGCCAGAGCAGCCAGCGGCACGCCAGGTTTGACTCCGCTGGCAGCTCTAGAGATTTCAGCCACAGTGCCTTCTCTTTTGATGATGCTGACCCATTTGGGTCCTCTGCCCCGTTTAAGGCCCCATCAGAGAATCAAAGTCCCAACAAAAGTTCTGATAGTTGGAGAGCTTTCTAA 3141 45.34 MDQFDAFFRRADLDGDGRISGAEAVAFFQGSNLSKNVLAQIWMHADQRKTGFLGRPEFYNALRLVTVAQSKRELTPDIVKAALYGPAAAKIPPPKIVLPAVSTPQSTSVPAASPPQMSMPAPTASQNFGFRGQGVPSVGVNQQHISAQPNPSMRLPQATPGGVASSTQLVVAAAEHSGGGHVRSSSLPNTNDWLGGRPGGALAAGPRGVSPSVPSPATSLSSALVPSQPMPNDRALAVSGNGFTSKSAIGADMFSITPSPHRPDSTGLNNTANSSIGPSAIVPVSSVSQPLSQHKSMESLQSAFVSRPLSGAPLQLSQSPLQLSQSPLQLSQSSLEPTKEVRATGPSPLISSGITTGARNSTSENTQLTWPKMKPTDVQKYTKVFMEVDTDRDGKITGEQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLREFCFALYLMERYREGRPLPAALPNNVMFDETLLSMTGQPNVVHPNAAWGPHPGFGQQQPQVAARSMAPTAGLRPPTNVPASKAGGARLSNAQKSRTPVLEDSFLDQSDKNQQNSASPNAQDATASEKKASPYIYQSTFILYNVILDSREKIEFYRTMMQELVLHKSRCDSRLNEITERASADRREAETLGKKYEEKYKQVADIASKLTIEEANYRDVQERKTELHEAIIKMEQGGSADGILQVRADRIQSDIELLLKALTERCKRHGIDVKSAAMIELPVGWQPGIADDAAVWDEEWDKFEDEGFSNDLNLDPKRVSASKPKMSRSLDEKDLEDFNSTPDSSFNGHDKTKVGIFSSTINHGLESEFMYSHSEDESARSPYGSPAAKTSLESPREFSDPVYEKSPEAYSFDESAWGAFDNNDDVDSVWGIKPVNTKESDAEKHRDIFGSGDFDTISAKTASPNADSFFQTKSPFFEDSVPPTPLSRFGNSSSPRYSDVGDHFFDNSSRFDSFSMQDPSFSPQREKFSRFDSIGSSQDFGRNQEKFSRFDSISSSMDFGQSSQRHARFDSAGSSRDFSHSAFSFDDADPFGSSAPFKAPSENQSPNKSSDSWRAF 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13153913 13161035 + Carg21364-RA Car01g01591 142455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01591 1046 MobiDBLite consensus disorder prediction 737 776 - -
Car01g01591 1046 MobiDBLite consensus disorder prediction 751 769 - -
Car01g01591 1046 Pfam Cytoskeletal-regulatory complex EF hand 371 442 IPR000261 GO:0005515
Car01g01591 1046 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509
Car01g01591 1046 ProSiteProfiles EH domain profile. 1 90 IPR000261 GO:0005515
Car01g01591 1046 MobiDBLite consensus disorder prediction 1027 1046 - -
Car01g01591 1046 MobiDBLite consensus disorder prediction 317 369 - -
Car01g01591 1046 MobiDBLite consensus disorder prediction 476 560 - -
Car01g01591 1046 MobiDBLite consensus disorder prediction 945 1007 - -
Car01g01591 1046 MobiDBLite consensus disorder prediction 520 560 - -
Car01g01591 1046 MobiDBLite consensus disorder prediction 317 340 - -
Car01g01591 1046 ProSiteProfiles EH domain profile. 377 460 IPR000261 GO:0005515
Car01g01591 1046 MobiDBLite consensus disorder prediction 802 830 - -
Car01g01591 1046 MobiDBLite consensus disorder prediction 195 228 - -
Car01g01591 1046 Pfam EF hand 5 21 IPR002048 GO:0005509
Car01g01591 1046 MobiDBLite consensus disorder prediction 212 228 - -
Car01g01591 1046 MobiDBLite consensus disorder prediction 1023 1046 - -
Car01g01591 1046 MobiDBLite consensus disorder prediction 348 369 - -
Car01g01591 1046 MobiDBLite consensus disorder prediction 904 927 - -
Car01g01591 1046 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01591 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101204624 1595.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01591 Car09g00036 CCT
Car01g01591 Car09g00036 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01591 Car-Chr1:13153913 Car18g00543 Car-Chr18:4547776 1.04E-14 dispersed
Car09g00036 Car-Chr9:182054 Car01g01591 Car-Chr1:13153913 4.05E-121 transposed
Car01g01591 Car-Chr1:13153913 Car11g01415 Car-Chr11:11580206 3.29E-07 wgd
Car01g01591 Car-Chr1:13153913 Car19g00615 Car-Chr19:7611354 1.54E-06 wgd
Car01g01591 Car-Chr1:13153913 Car09g00035 Car-Chr9:171299 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g78 . . . . . . . . . . Cma01g02025 Cma09g00044 Car01g01591 . . Cpe06g00014 . . . . . . . . . . . . . . . . . Cone17ag1459 Cone20ag0016 Lsi04g01819 Csa04g02715 . . . . . . . . . . . . Cmo09g00045 . . . Car09g00036 . Cpe02g00029 Bhi09g02853 Tan01g5126 Cmetu07g1818 . Hepe01g2350 Mch11g0047 . Cla11g01832 Cam11g1899 Cec11g1925 Cco11g1934 Clacu11g2063 Cmu11g1868 Cre11g2276 . . Chy07g00404 Cme07g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01591 Car_Chr01 FPKM 2.883581 2.882786 5.812396 6.380167 0.896224 0.816473 1.188599 2.370415 2.26865 1.964982