Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01595 ATGAGTTTCATTTGGCTTCTTTCATTGCTATCTCTTTATTGTGGTATATTCCCTGTTGGGCTTGGTAAGAACCTCTCCTCAAGACCATCGGTTGTGAACATTGGAGCTATTTTTTCTTTTGATTCTACCATTGGAAAAGTTGCCAAGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCCTACCATTCTTCCCACAACCAACCTTTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTCTTAGGCATGGTCGAAGTTTTGCAACTTATGGAGAATGCAACCGTCGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAATTGCAACCGAGTTCCAAGTTCCTCTAGTCTCATTTTCAGCTACAGATCCTACTCTCTCCGCCCTTCAGTTTCCCTTTTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAAATGACTGCAGTTGCTGAGATTATTGAGTACTATGATTGGAAAGAGGTTATCGCTATATACGTCGATGACGATTATGGGTGGAATGGTATTGCAGCATTGGATGATAAGCTTTCTGAAAAACGTTGTAAAATCACATACAAGGTGGGTATTAGTCCCGAAACTGCGGTAAACCAAGTCCAAGTTATGGATCAACTTGTTAAGATTGCATTGATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCCAAATTAGGCACTTTAGTCTTTTCAGTGGCTAAATCCCTTCAAATGATGGGCAATGGATATGTATGGATAGCAACTGATTGGCTTTCGTCTCTACTAGATAGTGTTGTTCCCCCACCTCCTGAGACCTTGGACTCGATGCAAGGAGTTCTTTCTTTACGCCAGCACACAACAGAGTCAAATAAAAAGAAAGCTTTTGTTTCCAGGTGGAATAAGTTAACTGGTGGCTCTTTAGGTCTGAATGCTTATGGTCTCTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATTGACAAATTTTTTAATCAAGGTGGGGTCATTACACATTCTAATGATTCCAGGCTGAATTTCAATGGAAACGGTGATCTTCATCTTGAAGCTATGACTATCTTCGATGGTGGAAATCATCTGCTGAATAACATATTGGAGAGTGACCTTGTTGGTTTGACGGGTGCCCTTAAGTTCGATTCTGGTAGATCCCTTGTTCATCCTGCATATGATATTATTAACGTTATCGGGACAGGGTCAAGAAGGGTTGGCTACTGGTCTAACTATTCTGGTCTATCAATTGAAGCTCCTGAGATACTCTATTCCAAACCACCTAACCGTTCACACGCAAATCAGAAGCTGTACGAGGTTATATGGCCAGGAAATACAGTGGAAAAGCCTCGAGGATGGGTGTTCCCAAACAACGGGAAGCTACTAAACATTGGAGTGCCACTTCGGGCCAGTTTCAAGGAGTTTGTATCACAAATCAAAGGGTCCGACAATTTCCAAGGTTTCTGCATTGATGTGTTTACAGCTGCTGTAAGCTTGTTACCTTACGCTGTCCCGCACCAATTCATAGCCTTTGGCAATGGCCATGAGAATCCAAATTACACAGATCTTGTATATGGGATAACAACTGGCAAATTTGATGCCGTTGTTGGAGACATAGCCATTGTCACAAGCCGTACAAGGCTTGTGGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCACTCAAAAAACTCAACACTGGTGCTTGGGCTTTCTTGCATCCATTTTCTCCAGCCATGTGGATGGTTACTGCTGCTTTCTTCCTTTTTATCGGAATAGTCGTCTGGATTCTGGAGCATAGGACGAACGATGAATTCCGAGGCCCACCGAGAAGACAATGCATTACAATTTTATGGTTTAGCTTCTCAACTCTATTCTTTGCCCATAAGGAGAACACAGTTAGCACTCTCGGCCGCCTTGTGCTGATCATATGGCTGTTTGTGGTTTTGATTATAAATTCTAGCTACACTGCAAGCTTAACATCCATTCTCACGGTGCAGCAGCTATATTCTCCAATCACAGGAATAGAAACCTTGAGGGAAATTGATGAACCGATTGGTTTCCAAGTTGGATCTTTTGCTGAACGTTATCTGAGTGAGGAGCTGAACGTGTCTAGATCTAGGCTTATTCCTCTTGGATCACCGGAAGAATATGCCAAGGCACTTGATCTTGGCCCTGGCAAGAAGGGAGGCGTTGCTGCTGTAGTTGATGAACTTCTATATGTAGAAAATTTCATCTCTAGAGAGTGTAAATTCAGAGTTGTTGGTCAAGAGTTTACCAAAAGCGGCTGGGGTTTCGCATTCCCACGAGACTCTCCATTGGCTATAGACATGTCAACTGCCATTTTGCAGCTATCCGAGAACGGCGATCTGCAACGGATACACGACAAATGGGTTGTGAAAAGTGCTTGCACCTCAGACAGTACAGATCTTGAATCAGACTCGCTTCAACTTAAGAGCTTCTGGGGTCTCTTTCTTATCTGTGGGACAGTGTGTTTCATTGCCCTTGCCATATACTGCTTTCAGATTATTCGTCAGCTATACCATTCTGATTCAAAAGAATCTGATCTGTCTAGCAGTAGTGGATCGCATCCGAACCGTCTTCGACGAATCATGTCGTTGTTTGATGAGAAGAAAGAACCAAGGCAAAGCAAACGAAGGAAAATTGAGAAATCGTCCGAAAATGATAAGAATGATGGTAATTTGGAGGTAAATCCTTGA 2751 42.97 MSFIWLLSLLSLYCGIFPVGLGKNLSSRPSVVNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPTTNLWLQMQNSNCSGFLGMVEVLQLMENATVAIIGPQSSVVAHISSQIATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIIEYYDWKEVIAIYVDDDYGWNGIAALDDKLSEKRCKITYKVGISPETAVNQVQVMDQLVKIALMESRVMVLHVNPKLGTLVFSVAKSLQMMGNGYVWIATDWLSSLLDSVVPPPPETLDSMQGVLSLRQHTTESNKKKAFVSRWNKLTGGSLGLNAYGLYAYDSVWVVAHAIDKFFNQGGVITHSNDSRLNFNGNGDLHLEAMTIFDGGNHLLNNILESDLVGLTGALKFDSGRSLVHPAYDIINVIGTGSRRVGYWSNYSGLSIEAPEILYSKPPNRSHANQKLYEVIWPGNTVEKPRGWVFPNNGKLLNIGVPLRASFKEFVSQIKGSDNFQGFCIDVFTAAVSLLPYAVPHQFIAFGNGHENPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPLKKLNTGAWAFLHPFSPAMWMVTAAFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPITGIETLREIDEPIGFQVGSFAERYLSEELNVSRSRLIPLGSPEEYAKALDLGPGKKGGVAAVVDELLYVENFISRECKFRVVGQEFTKSGWGFAFPRDSPLAIDMSTAILQLSENGDLQRIHDKWVVKSACTSDSTDLESDSLQLKSFWGLFLICGTVCFIALAIYCFQIIRQLYHSDSKESDLSSSSGSHPNRLRRIMSLFDEKKEPRQSKRRKIEKSSENDKNDGNLEVNP 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13172205 13176642 + Carg21360-RA Car01g01595 142459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01595 916 MobiDBLite consensus disorder prediction 865 916 - -
Car01g01595 916 MobiDBLite consensus disorder prediction 880 908 - -
Car01g01595 916 Pfam Receptor family ligand binding region 50 406 IPR001828 -
Car01g01595 916 Pfam Ligand-gated ion channel 810 840 IPR001320 GO:0015276|GO:0016020
Car01g01595 916 Pfam Bacterial extracellular solute-binding proteins, family 3 488 809 IPR001638 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01595 Car09g00032 CCT
Car01g01595 Car09g00032 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01595 Car-Chr1:13172205 Car20g00529 Car-Chr20:2910769 0 dispersed
Car10g00395 Car-Chr10:1961118 Car01g01595 Car-Chr1:13172205 6.87E-142 dispersed
Car01g00059 Car-Chr1:327791 Car01g01595 Car-Chr1:13172205 1.24E-09 transposed
Car01g01595 Car-Chr1:13172205 Car11g01418 Car-Chr11:11594571 0 wgd
Car01g01595 Car-Chr1:13172205 Car19g00619 Car-Chr19:7642635 0 wgd
Car01g01595 Car-Chr1:13172205 Car03g00575 Car-Chr3:5494318 0 wgd
Car01g01595 Car-Chr1:13172205 Car07g00334 Car-Chr7:1677154 0 wgd
Car01g01595 Car-Chr1:13172205 Car09g00032 Car-Chr9:157713 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01595 K05387 - csv:101204862 1588.55