Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01596 ATGGCCACTCACGCAGCTCTGGCTTCAACAAGGATCCCCACCAACACAAGGCTTCCTTCCAAGACTTCCTATTCTTTCCGACCTCGATGCTCATCCAAGAGGCTGGATGTTGCTGAGTTCAATGGGCTTAGATCTGCTTGCCTGACCTTCTCTAACAATGGCAGAGAAGGATCGCTCTTCGACGTCGTGGCTGCTCAACTGACTCCCAAGGCAGTAGGATCATTTCCGGTTAGGGGAGAAACAGTGGCTAAACTCAAGGTGGCAATCAATGGATTTGGACGTATTGGCCGAAACTTTCTGCGGTGCTGGCATGGCAGGAAAGACTCGCCTCTCGATGTTGTCGTTGTCAACGACAGTGGTGGTGTCAAGAACGCCTCCCACTTGCTAAAATATGATTCCATGCTGGGAACTTTCAAGGCAGAGGTGAAAATTGTAGACAATGAAACCATATCTGTTGATGGGAAGCCAATCAAGGTTGTCTCAGGCAGGGACCCCCTCAAGCTTCCTTGGGGCGAGTTAGGCATTGACATCGTTATTGAGGGTACAGGAGTGTTCGTGGATGGCCCAGGGGCAGGGAAACACATCCAAGCAGGTGCAAAGAAGGTTCTCATCACTGCTCCTGCAAAAGGTGCTGATATTCCAACATATGTTGTTGGGGTAAACGAAAAAGATTACTACCATGATGTTGCTAACATCATTAGGTCAGTAACGGTTTCGTTCTTGGAGCTGAATTTGTTTTTGACCTTTGAGCTGCTAACTTTTGCTCTTAAACTTTTATGCAGCAATGCTTCTTGCACCACCAATTGCCTTGCTCCTTTTGTGAAGATCATTGATGAGGAATTTGGCATTGTGAAGGGAACGATGACAACCACTCACTCCTACACTGGAGACCAGAGACTTTTGGATGCATCACACCGTGACTTGAGACGAGCCAGGGCCGCAGCTTTGAACATTGTCCCCACAAGCACTGGTGCAGCAAAGGCCGTATCCCTTGTGCTGCCCCAGCTTAAGGGCAAGCTCAATGGTATTGCACTTCGTGTGCCTACTCCAAATGTTTCAGTTGTTGACCTCGTCGTGAACGTTGCGAAGAAAGGCATCTCCGCAGATGATGTCAATGCTGCCTTCAGAAAGGCAGCTGATGGACCATTGAAGGGCGTGCTAGCCGTGTGCGATATTCCTCTTGTTTCTGTGGACTTTAAGTGCACTGATGTTTCCTCCACAATCGACTCTTCATTAACAATGGTAATGGGAGATGATATGCTCAAGGTGGTCGCCTGGTACGACAATGAATGGGGATACAGCCAAAGAGTTGTGGACTTGGCTCATTTGGTGGCAAGCAAATGGCCGGGAGTGGGATCGGGAAAAAGTGGAGATCCGTTGGAGGACTTCTGCCAGACTAACCCAGCTGATGAAGAGTGCAAAGTCTACGAAGCTTAG 1437 48.85 MATHAALASTRIPTNTRLPSKTSYSFRPRCSSKRLDVAEFNGLRSACLTFSNNGREGSLFDVVAAQLTPKAVGSFPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKPIKVVSGRDPLKLPWGELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVLITAPAKGADIPTYVVGVNEKDYYHDVANIIRSVTVSFLELNLFLTFELLTFALKLLCSNASCTTNCLAPFVKIIDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISADDVNAAFRKAADGPLKGVLAVCDIPLVSVDFKCTDVSSTIDSSLTMVMGDDMLKVVAWYDNEWGYSQRVVDLAHLVASKWPGVGSGKSGDPLEDFCQTNPADEECKVYEA 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13175970 13179689 - Carg21359-RA Car01g01596 142460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01596 478 MobiDBLite consensus disorder prediction 8 23 - -
Car01g01596 478 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 86 187 IPR020828 GO:0051287
Car01g01596 478 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 263 270 IPR020830 GO:0016620
Car01g01596 478 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 270 427 IPR020829 GO:0016620
Car01g01596 478 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01596 K05298 GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13] - csv:101205112 809.675
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01596 Car09g00031 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01596 Car-Chr1:13175970 Car11g01247 Car-Chr11:10404826 3.59E-172 dispersed
Car01g01596 Car-Chr1:13175970 Car09g00031 Car-Chr9:155021 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g68 Blo01g01643 . . . Bpe02g00301 . . Bma01g02416 . . Cma01g02029 Cma09g00036 Car01g01596 . . Cpe06g00010 . . . . . . . . . . . . . . . . . Cone17ag1465 Cone20ag0011 Lsi04g01828 Csa04g02722 . . . . Bda11g00981 . . . . . Sed01g2415 Cmo01g02084 Cmo09g00037 . . . Car09g00031 . . Bhi09g02843 Tan01g5131 Cmetu07g0789 . Hepe01g2355 Mch11g0042 . Cla11g01837 Cam11g1904 Cec11g1931 Cco11g1940 Clacu11g2068 Cmu11g1874 Cre11g2282 . . Chy07g00409 Cme07g00039
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007528 1 1 1 1 1 0 2 0 0 1 1 1 2 1 1 2 0 2 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01596 Car_Chr01 FPKM 4.030329 5.557743 6.967041 7.932912 22.069698 19.833382 24.236048 9.909375 10.481985 10.930249