Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g01599 | ATGCGTCCTTTTAGGTACCTCGCCGATGCCAACTCCTCCTCCATCTCCGACACGGTGGAGCCCGAGAGGTATGACTCCGACTTCGTCATAATCCTCGCCGCTCTTCTCTGCGCCTTGATATGCGTTCTTGGTCTCGTTGCTGTCGCTCGATGTGCCTGGCTACGCCACCTCGCTGGCGATGGAGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCATCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACCGCCGAGTTTGCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAATTCGTTGTCGGTGATGAAATCCGCGTTCTGCCGCAGTGTGGCCATGGATTTCACGTGTCCTGCATCGATACGTGGTTCCGATCTCACTCCTCCTGTCCTTCATGCCGTCAGATTCTGGTGGGAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCTGCGAGCTCGAGTTCGAACGGTGGGACTGAATCCAGAGTAAAAGATGAAGGAGAAGATAAGAGGAATAGGTTCTTACCTTAG | 561 | 55.44 | MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLPQCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDKRNRFLP | 186 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 13188869 | 13189429 | + | Carg21356-RA | Car01g01599 | 142463 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g01599 | 186 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 145 | IPR001841 | - | |
| Car01g01599 | 186 | Pfam | Ring finger domain | 102 | 145 | IPR001841 | - | |
| Car01g01599 | 186 | MobiDBLite | consensus disorder prediction | 159 | 186 | - | - | |
| Car01g01599 | 186 | MobiDBLite | consensus disorder prediction | 171 | 186 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g01599 | Car-Chr1:13188869 | Car06g00141 | Car-Chr6:871727 | 3.95E-57 | dispersed | |
| Car01g01599 | Car-Chr1:13188869 | Car09g00029 | Car-Chr9:146924 | 2.47E-124 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g01599 | - | - | csv:101207021 | 332.798 |