Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01605 ATGGCTCTGCCTAAGTCACTGCTTCTAGCGCTATGCATGTGCGTTTTTGTCGTAGCAAGTTGTGGGAAGGACTTTTCAATCGTGGGTTACTCAGCAGAAGACTTAACTTCCATGGATAAACTTATTGAGCTCTTTGAAGAATGGATATCAAAGCACGGCAAGATTTATGAGACCATCGAAGAAAAGTGGAATAGATTTGAGGTGTTTAAAGACAACTTGAAGCACATTGATGAAACAAACAAGAAAGTGAGTAGTTATTGGCTTGGACTTAATGAGTTTGCTGATTTGACCCACCAAGAGTTCCAAAAGATGTATCTTGGCCTGAAAGTTGAGTCGTCTCGAACAAGGCAATCCCCAGAAGAGTTCACCTACAAGGATATTGTAGATTTGCCCAAGTCGGTGGATTGGAGAAAGAAAGGAGCTGTGACTCGTGTCAAGAACCAAGGTTCATGTGGTAGCTGCTGGGCATTTTCCACTGTTGCTGCAGTTGAGGGGATAAATAAGATTGTTGGTGGAAATTTGACTTCGTTATCAGAGCAGGAACTAGTTGATTGCGATAGACCTTATAACAATGGGTGCCATGGGGGCCTCATGGACTACGCATTCTCTTTTATTGTCTCTAGTGGTGGACTTCACAAGGAAGAAGACTACCCTTATCTCGAGGAAGAAAGCACTTGCGAGAACAAAAAGGGGGAACTGGAGGTAGTGACAATCTCTGGCTATAAGGACGTACCAGAGAACAATGAAGGCAGCCTCATAAAGGCATTGGCACACCAGCCACTCAGCGTGGCCATAGAAGCTTCAGGAAGAGATTTCCAATTCTACAGCGGGGGCATTTTCGACGGACCCTGTGGAACAGAGCTTGATCATGGAGTCGCAGCCGTTGGATATGGATCATCAAAGGGAGTGGACTACATCATTGTGAAGAACTCGTGGGGACCCAAATGGGGAGAGAAGGGATTTATAAAAATGAAGAGGAACACTGGGAAGCCTGCAGGGCTGTGTGGAATCAATAAAATGGCTTCCTATCCTACTAAAAATAAGTGA 1047 44.7 MALPKSLLLALCMCVFVVASCGKDFSIVGYSAEDLTSMDKLIELFEEWISKHGKIYETIEEKWNRFEVFKDNLKHIDETNKKVSSYWLGLNEFADLTHQEFQKMYLGLKVESSRTRQSPEEFTYKDIVDLPKSVDWRKKGAVTRVKNQGSCGSCWAFSTVAAVEGINKIVGGNLTSLSEQELVDCDRPYNNGCHGGLMDYAFSFIVSSGGLHKEEDYPYLEEESTCENKKGELEVVTISGYKDVPENNEGSLIKALAHQPLSVAIEASGRDFQFYSGGIFDGPCGTELDHGVAAVGYGSSKGVDYIIVKNSWGPKWGEKGFIKMKRNTGKPAGLCGINKMASYPTKNK 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13208394 13210037 + Carg21350-RA Car01g01605 142469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01605 348 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 305 324 IPR025661 -
Car01g01605 348 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Car01g01605 348 Pfam Cathepsin propeptide inhibitor domain (I29) 45 101 IPR013201 -
Car01g01605 348 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 288 298 IPR025660 -
Car01g01605 348 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 148 159 IPR000169 -
Car01g01605 348 Pfam Papain family cysteine protease 130 345 IPR000668 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01605 K16290 XCP; xylem cysteine proteinase [EC:3.4.22.-] - csv:101205826 670.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01605 Car-Chr1:13208394 Car11g01109 Car-Chr11:8810869 3.39E-126 dispersed
Car19g00445 Car-Chr19:6186291 Car01g01605 Car-Chr1:13208394 2.22E-72 dispersed
Car01g01605 Car-Chr1:13208394 Car11g01424 Car-Chr11:11628123 6.76E-174 wgd
Car01g01605 Car-Chr1:13208394 Car19g00626 Car-Chr19:7680081 4.72E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g53 . . . . . . . . . . . . Car01g01605 . . . . . . . . . . . . . . . . . . Cone4ag2036 . . . Lsi04g01835 Csa04g02733 . . . . . . . . . . . Cmo01g02094 . . . . . . Cpe02g00017 Bhi09g02835 Tan01g5151 Cmetu07g1435 . Hepe01g2364 Mch11g0035 . Cla11g01846 Cam11g1913 Cec11g1938 Cco11g1951 Clacu11g2077 Cmu11g1882 Cre11g2290 . . . Cme07g00030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01605 Car_Chr01 FPKM 17.230158 15.206587 14.455807 14.109315 10.019334 7.92389 10.991778 18.095881 20.906553 24.577444