Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01606 ATGGAGACAGTTGAGTTCAAAGTAGATATGGTCGGAATCCACGAGAAAAGGCTCAGGAAATGTCTGTACAAATTGAAAGGTGTGGAGAAGGTGGAGGTGGATGCGAACAGCCAGAAGGTGGCGGTGACCAGCTACATTCACCGGAACAAGATACTGAAAGCGATGAGGAGAAGTGGTCTGAAAGCCGATTTCTGGTCGGCCCAAAACGAGCTTCTTAATGCATACGCCGCCACTTATGGAGCCTTCAGATTCTGCTCCTACAACACCTTCTTTTAG 276 48.19 METVEFKVDMVGIHEKRLRKCLYKLKGVEKVEVDANSQKVAVTSYIHRNKILKAMRRSGLKADFWSAQNELLNAYAATYGAFRFCSYNTFF 91
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13211236 13211959 + Carg21349-RA Car01g01606 142470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01606 91 CDD HMA 5 62 IPR006121 GO:0046872
Car01g01606 91 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 20-LIKE 10 90 - -
Car01g01606 91 Pfam Heavy-metal-associated domain 15 59 IPR006121 GO:0046872
Car01g01606 91 SUPERFAMILY HMA, heavy metal-associated domain 13 70 IPR036163 GO:0046872
Car01g01606 91 Gene3D - 1 63 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01606 - - - csv:101218788 166.777
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01606 Car09g00024 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01606 Car-Chr1:13211236 Car02g00705 Car-Chr2:5216560 2.36E-14 dispersed
Car01g01606 Car-Chr1:13211236 Car09g00024 Car-Chr9:130985 4.84E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g49 Blo01g01647 . . . . . . Bma01g02420 . . Cma01g02036 . Car01g01606 . . Cpe06g00004 . . . . . . . . . . . . . . . Cone4ag2037 . . . Lsi04g02419 Csa04g02736 . . . . Bda11g00987 . . . . . Sed05g1024 Cmo01g02095 Cmo09g00028 . . . Car09g00024 . Cpe02g00016 Bhi09g02832 Tan01g5153 Cmetu07g0142 . Hepe01g2366 Mch11g0032 . Cla11g01849 Cam11g1915 Cec11g1940 Cco11g1954 Clacu11g2080 Cmu11g1884 Cre11g2292 . . Chy07g00423 Cme07g00026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011627 1 1 1 1 0 0 2 0 0 1 1 1 0 1 1 2 0 1 2 1 1 1 1 1 0 1 1 0 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01606 Car_Chr01 FPKM 26.147697 29.522795 18.023851 17.366787 11.901354 11.431999 12.475224 23.31123 23.349211 22.502365