Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g01608 | ATGACGGGATCTGAGACCGGAGTGATGACCAGCGGCGAACCCTTCACCATCGGTTTCCAGAAGAGTCCAGTACAGTCACAACAGTCGGTCTTGCCTGGCTTGCATTTGCCCTTCGGCGCCGACGGCGTCTACAAGCCCGCTCCCTCCGTCTCGCCCACCTACCAGTCCCCCGGCGTCGGTGTTTCCGGTAATGCCGGTGCCGATGTTTCTCCTCGTGAAGCTTTCGTTGATATGAATACGCAAAGCGAGCCTGTCAAGAGGAAGAGAGGGAGGCCTAGGAAGTATGGGCCAGATGGCAGTATGGCAGTGACTTCTGCAGACCCGTCCGCCGCCGCAACTCAGTCCGGTGGAGGTTTTTCTCCTCCACCCACTGGCGTGACTCCGTCGGGAGGATCAGCCTCTCCAACTTTGAAGAAAGCCAGAGGCAGACCCCCTGGCTCTGGCAAAAAGCAGCAGCTGGATGCCTTGGGATCAGCCGGAGTTGGATTTACCCCACATGTCATCACCGTGAAAGCTGGAGAGGACGTGTCTTCAAAAATAATGTCAATCTCACAGAATGGTCCTAGAGCTGTTTGTATTCTTTCAGCAAATGGAGCTATATCCAACGTGACTCTACGTCAACCAGCCATGTCCGGTGGAACCGTGACTTATGAGGGGCGATTTGAGATTTTGTCACTATCTGGGTTATATCTTCTCACCGAGAATGGTGGTCAGCGTAGCCGAACTGGGGGTTTAAGTGTTTCATTGTCTGGACCAGATGGTAGAGTTTTGGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCCTCTCCCGTTCAGGTGGTGGTGGGGAGCTTTGTGAACGATGGGGGGCACAAGGAATTGAAACAAGCAAACCAAATAGAACAGCGGCCTGTTACCGCACCACATAAACTCGCTCCGATCCGTGCTGGAATGGCAGGGGCGAGCAGTCCGCATTCACGTGGGGCTCTCAGTGAATCCTCAGGAGGGCAAGGGAGCCCGTTTAATCAGAGTGGTGGAGCCTGCAATAACACCGCATCTTGGAAGTGA | 1047 | 54.82 | MTGSETGVMTSGEPFTIGFQKSPVQSQQSVLPGLHLPFGADGVYKPAPSVSPTYQSPGVGVSGNAGADVSPREAFVDMNTQSEPVKRKRGRPRKYGPDGSMAVTSADPSAAATQSGGGFSPPPTGVTPSGGSASPTLKKARGRPPGSGKKQQLDALGSAGVGFTPHVITVKAGEDVSSKIMSISQNGPRAVCILSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGLYLLTENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVNDGGHKELKQANQIEQRPVTAPHKLAPIRAGMAGASSPHSRGALSESSGGQGSPFNQSGGACNNTASWK | 348 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 13213409 | 13218046 | - | Carg21347-RA | Car01g01608 | 142472 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g01608 | 348 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 165 | 280 | IPR005175 | - | |
| Car01g01608 | 348 | MobiDBLite | consensus disorder prediction | 106 | 134 | - | - | |
| Car01g01608 | 348 | MobiDBLite | consensus disorder prediction | 46 | 153 | - | - | |
| Car01g01608 | 348 | ProSiteProfiles | PPC domain profile profile. | 159 | 299 | IPR005175 | - | |
| Car01g01608 | 348 | MobiDBLite | consensus disorder prediction | 310 | 348 | - | - | |
| Car01g01608 | 348 | MobiDBLite | consensus disorder prediction | 319 | 348 | - | - | |
| Car01g01608 | 348 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car01g01608 | Car05g00844 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g01608 | Car-Chr1:13213409 | Car17g00389 | Car-Chr17:2588607 | 1.28E-70 | dispersed | |
| Car02g01141 | Car-Chr2:7822569 | Car01g01608 | Car-Chr1:13213409 | 9.04E-36 | dispersed | |
| Car05g01153 | Car-Chr5:11006775 | Car01g01608 | Car-Chr1:13213409 | 1.73E-55 | dispersed | |
| Car15g01061 | Car-Chr15:8352036 | Car01g01608 | Car-Chr1:13213409 | 6.06E-67 | dispersed | |
| Car15g01102 | Car-Chr15:8671648 | Car01g01608 | Car-Chr1:13213409 | 5.70E-56 | dispersed | |
| Car18g01102 | Car-Chr18:11045895 | Car01g01608 | Car-Chr1:13213409 | 7.40E-57 | dispersed | |
| Car19g00197 | Car-Chr19:1854847 | Car01g01608 | Car-Chr1:13213409 | 3.02E-58 | dispersed | |
| Car01g01608 | Car-Chr1:13213409 | Car05g00844 | Car-Chr5:8331160 | 3.41E-107 | wgd | |
| Car01g01608 | Car-Chr1:13213409 | Car09g00022 | Car-Chr9:126484 | 5.28E-47 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g01608 | - | - | csv:101207513 | 507.679 |