Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01610 ATGCAGATGGCTGAGGGTGACGAATCGGGGACACCAGAGGATAGGGTGGAATTTATGAAGGAGATCGAAAATTTCCACAGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAACTGCCTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGCACTTTTAGAGTATGAAAAGCATAAAAGACTAACGGGGGAACTGCAACTACCTGTTGGAGCCCTTCCTCAGTCTACAAATACAGAAAAGGAGAAATCCAGTTTCTTCGTCCAGACTGGCTACTATCAAGCTCCTGGCTCAGGTAGGGCTCGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTATTGTTGGATCTGGCGAGGATGCTGAGCCTATAATAAAGAATGACTGCTTTGAAGTATATGCATTAGTTCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACGCCTTTTAAAAAGGTGGTGAGCTTACCCACAAGAATTGATCCTCTTCAGACATCTGCCGTGGTGAGCCTTCATGGCCGACTTTTTGTGCGAGCCCCTTTTGAGCAAGGATCCATGTGA 666 48.2 MQMAEGDESGTPEDRVEFMKEIENFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVALLEYEKHKRLTGELQLPVGALPQSTNTEKEKSSFFVQTGYYQAPGSGRARRDAAARAMQGWHAQRIVGSGEDAEPIIKNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPTRIDPLQTSAVVSLHGRLFVRAPFEQGSM 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13223074 13226503 + Carg21345-RA Car01g01610 142474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01610 221 Pfam Hsp20/alpha crystallin family 139 216 IPR002068 -
Car01g01610 221 Pfam ARID/BRIGHT DNA binding domain 15 88 IPR001606 GO:0003677
Car01g01610 221 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 125 221 IPR002068 -
Car01g01610 221 ProSiteProfiles ARID domain profile. 12 104 IPR001606 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01610 Car-Chr1:13223074 Car06g00146 Car-Chr6:888062 1.97E-65 dispersed
Car01g01610 Car-Chr1:13223074 Car16g01214 Car-Chr16:10219954 2.66E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2916 PF00011 HSP20 7.80E-05 CL0190 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01610 - - egu:105039437 271.166