Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01610 ATGCAGATGGCTGAGGGTGACGAATCGGGGACACCAGAGGATAGGGTGGAATTTATGAAGGAGATCGAAAATTTCCACAGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAACTGCCTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGCACTTTTAGAGTATGAAAAGCATAAAAGACTAACGGGGGAACTGCAACTACCTGTTGGAGCCCTTCCTCAGTCTACAAATACAGAAAAGGAGAAATCCAGTTTCTTCGTCCAGACTGGCTACTATCAAGCTCCTGGCTCAGGTAGGGCTCGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTATTGTTGGATCTGGCGAGGATGCTGAGCCTATAATAAAGAATGACTGCTTTGAAGTATATGCATTAGTTCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACGCCTTTTAAAAAGGTGGTGAGCTTACCCACAAGAATTGATCCTCTTCAGACATCTGCCGTGGTGAGCCTTCATGGCCGACTTTTTGTGCGAGCCCCTTTTGAGCAAGGATCCATGTGA 666 48.2 MQMAEGDESGTPEDRVEFMKEIENFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVALLEYEKHKRLTGELQLPVGALPQSTNTEKEKSSFFVQTGYYQAPGSGRARRDAAARAMQGWHAQRIVGSGEDAEPIIKNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPTRIDPLQTSAVVSLHGRLFVRAPFEQGSM 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13223074 13226503 + Carg21345-RA Car01g01610 142474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01610 221 Pfam Hsp20/alpha crystallin family 139 216 IPR002068 -
Car01g01610 221 Pfam ARID/BRIGHT DNA binding domain 15 88 IPR001606 GO:0003677
Car01g01610 221 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 125 221 IPR002068 -
Car01g01610 221 ProSiteProfiles ARID domain profile. 12 104 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01610 - - - egu:105039437 271.166
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01610 Car-Chr1:13223074 Car06g00146 Car-Chr6:888062 1.97E-65 dispersed
Car01g01610 Car-Chr1:13223074 Car16g01214 Car-Chr16:10219954 2.66E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g36 . . . . . . . . . . Cma01g02043 . Car01g01610 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g01577 . . Bma01g00689 . . Cmo01g02101 . . . . . . Cpe02g00012 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00085 . 1 326 ARID Transcription Factor Family AT1G04880 53.0 9.5e-94 341.3
Car08g00902 . 45 344 ARID Transcription Factor Family AT1G04880 52.0 7.8e-80 295.0
Car16g01214 . 163 432 ARID Transcription Factor Family AT1G20910 59.6 1.5e-87 320.5
Car06g00146 . 206 483 ARID Transcription Factor Family AT1G20910 54.2 4.6e-76 282.3
Car09g00069 CCT 16 315 ARID Transcription Factor Family AT1G76110 67.1 1.1e-113 407.1
Car01g01565 CCT 16 326 ARID Transcription Factor Family AT1G76110 63.9 2.4e-110 396.0
Car16g01214 . 154 462 ARID Transcription Factor Family AT1G76510 61.0 4.7e-106 382.1
Car06g00146 . 197 513 ARID Transcription Factor Family AT1G76510 56.8 1.3e-95 347.4
Car01g01610 . 5 218 ARID Transcription Factor Family AT1G76510 51.5 3.1e-73 273.1
Car14g01069 CCT,ECH 1 781 ARID Transcription Factor Family AT3G43240 58.3 6.3e-260 894.0
Car01g00013 . 1 778 ARID Transcription Factor Family AT3G43240 58.7 1.0e-257 886.7
Car17g00618 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 56.7 4.0e-254 874.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2916 PF00011 HSP20 7.80E-05 CL0190 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01610 Car_Chr01 FPKM 12.500757 15.368347 45.225025 44.776367 16.333471 14.760534 17.798555 21.257406 21.772449 22.967556