Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00017 ATGAAGGAGAGTGGACGGAAACAAGGCGCTGTTGCACCATGCGCCGCCTGTAAGCTTCTTCGTCGGAGATGTGCTCAAGACTGCGTTTTCGCCCCGTATTTCCCCGCCGACGAGCCGCATAAGTTCGCCAGCGTCCATAAAGTCTTCGGCGCTAGTAATGTCAACAAGATGTTACAGGAGTTGCCGGAGCACCAGCGGAGCGACGCCGTGAGCTCGATGGTGTACGAAGCAAACGCAAGGGTTCGAGATCCAGTGTACGGCTGCGTGGGAGCCATATCGTCGCTGCAACAGCAAATCGATCTGTTACAAACGGAGCTAGCGATTGCCCAAGCGGAAGTAGTACACATGCGAATGCGTCAATTCACATCGTCATCCTCGAACCCGACAGCCGGACACTCGCCGGAAACTGCGTCGCCGTCGGGAAAGATCAACATTCCGCCGCAAAACAAGTCCTATTTTTCCATGGACAACATGGGGGAGTCGTTGTGGTCATCCTGCTAG 501 55.09 MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 178245 179346 + Carg13654-RA Car02g00017 142503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00017 166 MobiDBLite consensus disorder prediction 120 150 - -
Car02g00017 166 Coils Coil 92 112 - -
Car02g00017 166 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Car02g00017 166 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Car02g00017 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 156 - -
Car02g00017 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00017 Car-Chr2:178245 Car13g00345 Car-Chr13:6076039 9.10E-67 dispersed
Car04g00252 Car-Chr4:1433576 Car02g00017 Car-Chr2:178245 5.93E-50 dispersed
Car15g00405 Car-Chr15:2108674 Car02g00017 Car-Chr2:178245 6.45E-50 dispersed
Car16g00130 Car-Chr16:756156 Car02g00017 Car-Chr2:178245 3.98E-40 dispersed
Car20g00407 Car-Chr20:2301707 Car02g00017 Car-Chr2:178245 2.75E-51 dispersed
Car02g00017 Car-Chr2:178245 Car11g01652 Car-Chr11:12991308 2.41E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2922 PF03195 LOB 6.90E-44 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00017 - - csv:101220394 292.352