Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00048 ATGCGGCGAGGCAGGCCCTCAGATCCATTTACAGCGACAGAAGTGCCGAAATCTACCGTTCAGCGCGAGAATCCTCTCAAAGAGATCCGATACCGAGGCGTTCGGAAGCGTCCTTGGGGAAGATACGCCGCGGAGATCAGAGATCCCTGGAAGAAAACTAGGGTTTGGCTCGGTACCTTTGATTCTGCTGAAGAGGCTGCTCGTGCTTACGATACTGCTGCTCGGTCCCTCCGTGGAGCCAAGGCCAAAACTAACTTTCCTTTACATCCATCGACGATTTCGATTCAGCAACCTATTCCGTTTTATCAATCGCCGCCGGATTTGATCGATTCGAACGGTTTTGGCAAGATTGAGTGTGTCCAGGCTAATAGGCCTACGTCGAGCAGCTTGAGTTCCACTGTTGAGTCGTTTAGTGGGCCGCGGATTTCTAACCCTTTGTCGTCGTTGTCGATGGTTCCCCGGAGGCCGGTGCAGCCTGTTTCGCCCGACGACTGCCACAGCGACTGTGATTCCTCCTCCTCGGTTGTTGATGATGATGAGGTCTGTGTTCTCGCTTCTTTCCGTAGAGCCTTGCCGTTCGATCTTAACTTACCACCTCCCATGGACGTCGTGGATTTAACTGGTGATGATCTTCAAGCTACTGCTTTATGCCTCTGA 657 52.51 MRRGRPSDPFTATEVPKSTVQRENPLKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDTAARSLRGAKAKTNFPLHPSTISIQQPIPFYQSPPDLIDSNGFGKIECVQANRPTSSSLSSTVESFSGPRISNPLSSLSMVPRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 344071 344727 - Carg13623-RA Car02g00048 142534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00048 218 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Car02g00048 218 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Car02g00048 218 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 193 - -
Car02g00048 218 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Car02g00048 218 MobiDBLite consensus disorder prediction 1 26 - -
Car02g00048 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 23 193 - -
Car02g00048 218 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Car02g00048 218 MobiDBLite consensus disorder prediction 148 173 - -
Car02g00048 218 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
Car02g00048 218 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Car02g00048 218 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Car02g00048 218 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00048 Car19g00789 CCT
Car02g00048 Car19g00789 ECH
Car02g00048 Car20g00207 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00048 Car-Chr2:344071 Car06g00732 Car-Chr6:4705517 5.51E-46 dispersed
Car12g00028 Car-Chr12:143696 Car02g00048 Car-Chr2:344071 1.36E-29 dispersed
Car18g00699 Car-Chr18:8211262 Car02g00048 Car-Chr2:344071 1.64E-26 dispersed
Car11g01622 Car-Chr11:12854900 Car02g00048 Car-Chr2:344071 3.16E-74 wgd
Car19g00827 Car-Chr19:8807044 Car02g00048 Car-Chr2:344071 1.53E-76 wgd
Car02g00048 Car-Chr2:344071 Car20g00207 Car-Chr20:1191194 4.35E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2925 PF00847 AP2 8.20E-14 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00048 K09286 - csv:101221703 384.8