Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car02g00048 | ATGCGGCGAGGCAGGCCCTCAGATCCATTTACAGCGACAGAAGTGCCGAAATCTACCGTTCAGCGCGAGAATCCTCTCAAAGAGATCCGATACCGAGGCGTTCGGAAGCGTCCTTGGGGAAGATACGCCGCGGAGATCAGAGATCCCTGGAAGAAAACTAGGGTTTGGCTCGGTACCTTTGATTCTGCTGAAGAGGCTGCTCGTGCTTACGATACTGCTGCTCGGTCCCTCCGTGGAGCCAAGGCCAAAACTAACTTTCCTTTACATCCATCGACGATTTCGATTCAGCAACCTATTCCGTTTTATCAATCGCCGCCGGATTTGATCGATTCGAACGGTTTTGGCAAGATTGAGTGTGTCCAGGCTAATAGGCCTACGTCGAGCAGCTTGAGTTCCACTGTTGAGTCGTTTAGTGGGCCGCGGATTTCTAACCCTTTGTCGTCGTTGTCGATGGTTCCCCGGAGGCCGGTGCAGCCTGTTTCGCCCGACGACTGCCACAGCGACTGTGATTCCTCCTCCTCGGTTGTTGATGATGATGAGGTCTGTGTTCTCGCTTCTTTCCGTAGAGCCTTGCCGTTCGATCTTAACTTACCACCTCCCATGGACGTCGTGGATTTAACTGGTGATGATCTTCAAGCTACTGCTTTATGCCTCTGA | 657 | 52.51 | MRRGRPSDPFTATEVPKSTVQRENPLKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDTAARSLRGAKAKTNFPLHPSTISIQQPIPFYQSPPDLIDSNGFGKIECVQANRPTSSSLSSTVESFSGPRISNPLSSLSMVPRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL | 218 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 344071 | 344727 | - | Carg13623-RA | Car02g00048 | 142534 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car02g00048 | 218 | SUPERFAMILY | DNA-binding domain | 30 | 88 | IPR016177 | GO:0003677 | |
Car02g00048 | 218 | CDD | AP2 | 30 | 87 | IPR001471 | GO:0003700|GO:0006355 | |
Car02g00048 | 218 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 23 | 193 | - | - | |
Car02g00048 | 218 | ProSiteProfiles | AP2/ERF domain profile. | 30 | 87 | IPR001471 | GO:0003700|GO:0006355 | |
Car02g00048 | 218 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Car02g00048 | 218 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 | 23 | 193 | - | - | |
Car02g00048 | 218 | SMART | rav1_2 | 30 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Car02g00048 | 218 | MobiDBLite | consensus disorder prediction | 148 | 173 | - | - | |
Car02g00048 | 218 | Gene3D | AP2/ERF domain | 29 | 89 | IPR036955 | GO:0003700|GO:0006355 | |
Car02g00048 | 218 | PRINTS | Ethylene responsive element binding protein signature | 31 | 42 | IPR001471 | GO:0003700|GO:0006355 | |
Car02g00048 | 218 | PRINTS | Ethylene responsive element binding protein signature | 53 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Car02g00048 | 218 | Pfam | AP2 domain | 30 | 79 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car02g00048 | Car19g00789 | CCT | |
Car02g00048 | Car19g00789 | ECH | |
Car02g00048 | Car20g00207 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car02g00048 | Car-Chr2:344071 | Car06g00732 | Car-Chr6:4705517 | 5.51E-46 | dispersed | |
Car12g00028 | Car-Chr12:143696 | Car02g00048 | Car-Chr2:344071 | 1.36E-29 | dispersed | |
Car18g00699 | Car-Chr18:8211262 | Car02g00048 | Car-Chr2:344071 | 1.64E-26 | dispersed | |
Car11g01622 | Car-Chr11:12854900 | Car02g00048 | Car-Chr2:344071 | 3.16E-74 | wgd | |
Car19g00827 | Car-Chr19:8807044 | Car02g00048 | Car-Chr2:344071 | 1.53E-76 | wgd | |
Car02g00048 | Car-Chr2:344071 | Car20g00207 | Car-Chr20:1191194 | 4.35E-130 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
2925 | PF00847 | AP2 | 8.20E-14 | CL0081 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car02g00048 | K09286 | - | csv:101221703 | 384.8 |