Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00090 ATGCTCACGCAAATGCACCTCCTTCTCCCCCGCCGTGGTTTTGGCCTCATTGGGGCTATTTTCTTTGCCATGGCCGTCCTTGAGTGGTTCACGGCGGTGGCTCAGCTCCAACACCGTGTGCTGGATCTACATTGGCTTCCTGCCACCGCCACGTGGTATGGAAGCCCCGAGGGCGACGGTAGCGACGGTGGAGCATGTGGGTATGGAAATTTAGTGGATGTGAGGCCTCTAAAGGCCAGAGTTGGGGCTGTGAGTCCAATTCTGTTCAAAAACGGTGAAGGGTGTGGAGCATGTTACAAGGTGAAATGTCTAGACCAGAGGATTTGCTCTAGACGAGCCGTTACTGTAATCATCACCGACGAATGCCCCGGTGGGTATTGTTCTAATGGAAATACCCACTTCGATCTCAGCGGCGCCGCCTTTGGCCGTATGGCCATCGCCGGGGAAGGTGGGCAGCTCAGAAACAGAGGAGAAATCCCAGTAATTTACCGACGAACTCCCTGTAAGTATCGAGGCAAGAACATTGCCTTCCATGTCAATGAAGGCTCCACAGAATACTGGCTCTCTGTCTTGGTTGAATTCGAGGATGGGGATGGAGACATCGGTGCAATGCAAATAAAAGAAGGGAACTCGAGGGAGTGGCTGGAAATGAAGCATTTATGGGGAGCAAATTGGTGCATAATTGGAGGGCCTTTAAAGGGTCCATTTTCAGTGAGATTAACGACATTATCTACAGGAAGAACAGTGTCAGCTAGGGATATAATTCCGAGGAATTGGTCTCCAAAAGCCACTTACACTTCACGCCTTAATTTCTTCTCTTGA 822 50.61 MLTQMHLLLPRRGFGLIGAIFFAMAVLEWFTAVAQLQHRVLDLHWLPATATWYGSPEGDGSDGGACGYGNLVDVRPLKARVGAVSPILFKNGEGCGACYKVKCLDQRICSRRAVTVIITDECPGGYCSNGNTHFDLSGAAFGRMAIAGEGGQLRNRGEIPVIYRRTPCKYRGKNIAFHVNEGSTEYWLSVLVEFEDGDGDIGAMQIKEGNSREWLEMKHLWGANWCIIGGPLKGPFSVRLTTLSTGRTVSARDIIPRNWSPKATYTSRLNFFS 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 582178 583776 + Carg13581-RA Car02g00090 142576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00090 273 Pfam Lytic transglycolase 83 162 IPR009009 -
Car02g00090 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 173 IPR007112 -
Car02g00090 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 267 IPR007117 -
Car02g00090 273 Pfam Expansin C-terminal domain 175 256 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00090 Car11g01561 CCT
Car02g00090 Car20g00166 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00090 Car-Chr2:582178 Car06g00807 Car-Chr6:6226708 2.56E-78 dispersed
Car02g01336 Car-Chr2:8837079 Car02g00090 Car-Chr2:582178 3.84E-21 dispersed
Car11g01561 Car-Chr11:12429556 Car02g00090 Car-Chr2:582178 1.61E-108 wgd
Car02g00090 Car-Chr2:582178 Car20g00166 Car-Chr20:913776 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00090 K20628 - csv:101202998 491.115