Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00150 ATGGACTGGACTAGAGGCCACGTCATTGGCCAAGGCTCCTCTGCCACCGTCTTTCTCGCCACCGCGTCTCCCGGCGGCGATGTCTTCGCGGTCAAATCCGCTGAGGTTTCTCACTCGCAATCTCTACAGAGAGAGCAATGCTTCCTTTCTTGTTTAGCCTCTCCGTATGTGGTTTTTAGTAGAGGCTGCGATGTCCGTACCGAACAGAGTGGCATCGTGATGTTCAATTTGTTCATGGAGTATTTACCCAACGGCTCACTCGCCGACGCGATTCGCCGCCGTGGAGGGCGGCTGGACGAGGCGGCGATCGGAAATTACACGCGGGACTTACTACAGGGATTACAGCACATTCATTCAAAAGGCTTAGTACATTGCGACATTAAAGCCCGAAACGTTTTGATTGGCCGAGACGATAAGGCGAAACTGGCGGATTTCGGATGCGCCAAGTGGGTGAGCCAGACGGAAGTAATCGGCGGGACGCCCCTGTTTATGGCGCCTGAAGTGGCTCGTGGTGAGCACCAAGGACTCGCTTCCGACATTTGGTCAATTGGGTGTACAATCATTGAAATGGCCACCGGCGGCGGCTCGCCATGGATGAACACAACCGACAACGACCCAATTTCCGCCCTGTATCGAATTGGGTATTCCGGCCAGTCGCCGGAAATTCCATCTTTTTTATCCCAGAAAGCGAAGGATTTCTTAGAGAAGTGTTTTAGGAGAAACCCAAAAGAGAGATGGACGGCGAATCAGCTTCTAGATCACCCATTTTTAAGGGAAGTGAATTCCATTTCCACCGCAAAGCAATTCCGGGAAGTTGATTCAGATTCTCCGACGAGTGTTGTAGAACAGGGGATTTGGAGATCAATTGAAGAATCCGGATTCTTCCGACCCAGTTGGTCGCCGACAGAGCAGATCCGACGGCTGGCAATGGATTCAGGGGAGGCGAGATGGACGGAGGATGAGAATTGGACGACGATCCGAAGCGAAGAAGTGGGTGAGGAAGAGAGAGGCGGTGGCGGCAAAGGGTGGTTGGCAATGGAATTCATAGATAAGAAGAATATTAGGTGTAGAATTAGTAGAAATGATTTGGCGGACAATAGTTATCGTTCTTTGTATTTCAATGCTGCTTCCATCGACGAATGTACTGCCATGACGACGTAG 1161 51.16 MDWTRGHVIGQGSSATVFLATASPGGDVFAVKSAEVSHSQSLQREQCFLSCLASPYVVFSRGCDVRTEQSGIVMFNLFMEYLPNGSLADAIRRRGGRLDEAAIGNYTRDLLQGLQHIHSKGLVHCDIKARNVLIGRDDKAKLADFGCAKWVSQTEVIGGTPLFMAPEVARGEHQGLASDIWSIGCTIIEMATGGGSPWMNTTDNDPISALYRIGYSGQSPEIPSFLSQKAKDFLEKCFRRNPKERWTANQLLDHPFLREVNSISTAKQFREVDSDSPTSVVEQGIWRSIEESGFFRPSWSPTEQIRRLAMDSGEARWTEDENWTTIRSEEVGEEERGGGGKGWLAMEFIDKKNIRCRISRNDLADNSYRSLYFNAASIDECTAMTT 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 851898 854250 - Carg13520-RA Car02g00150 142636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00150 386 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Car02g00150 386 ProSiteProfiles Protein kinase domain profile. 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g00150 386 Pfam Protein kinase domain 5 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g00150 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00150 Car19g00708 CCT
Car02g00150 Car11g01503 CCT
Car02g00150 Car11g01503 ECH
Car02g00150 Car19g00708 ECH
Car02g00150 Car20g00544 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00992 Car-Chr1:9411627 Car02g00150 Car-Chr2:851898 1.08E-103 dispersed
Car02g00150 Car-Chr2:851898 Car07g00694 Car-Chr7:3562953 8.55E-69 dispersed
Car11g01503 Car-Chr11:12119711 Car02g00150 Car-Chr2:851898 1.29E-131 wgd
Car19g00708 Car-Chr19:8148277 Car02g00150 Car-Chr2:851898 4.11E-122 wgd
Car02g00150 Car-Chr2:851898 Car20g00544 Car-Chr20:2991302 0 wgd
Car02g00150 Car-Chr2:851898 Car03g00496 Car-Chr3:5114316 1.62E-88 wgd
Car02g00150 Car-Chr2:851898 Car07g00274 Car-Chr7:1447122 1.62E-95 wgd
Car02g00150 Car-Chr2:851898 Car09g00877 Car-Chr9:5372008 2.01E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88628 PF00069 Pkinase 4.00E-53 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00150 K20716 - csv:101208274 487.263