Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00212 ATGGTTCCGGCAAAAGCCGCCGAAGGTGAAGACATTTTTGGCCGTCGTGCTTGGTATGGTGGGATGATATCGAAGTTGGAAAAGCTGAAAGTGAAGAATTCAAATATGAAGAGTAAAAAGAGAAAGCTGAAGAGTCCTCAAACATCTGAGAGGCCTTCCAAATCTGCTCGGCCTTTAATCTCGCCGGAAGTGGAAGTTGTAGACGGAACAGAACAGGTTGAGAAGATGGAGCAGGGAGAAGTGTCTCAAGAGTTTGATGAAAGTTGTCCATGGAGGAACTTGGAGTTGATTTTCTTGATTCAGAACAAAGAATTCAACCAACAAAAGAAGGTCGATGCAGTTTTCAGCTTTGTAAACTCAAAGTGGAATGAGAAGGATAAATATCATGATAAGGTCAAAATGTCGCGCTTGATTGTTTTTCTTAGCGACTGGGTGCAGTCATTGTTGATTTCATCTGAAAAGAAAGCGAAGAATGATGGTGGAAAACATCATAACATGGCTATTGAGCCATGCTTAGATTATAGATGCTGGGAGTGCATATCGATGGATTTTTGTGCTTACATGGTTCTGATAAGACAATTGAACAAATTAGCGCTGAGATTCAAACTGGGAACGGCCTTGTCAGATGTTCATTGCTTACTCAAGTCGATAAATAATCTACTTGCAAGTTTTATGGAGGAAAAGGTGTACTTGAGAACTGAGGATAACTCTGAAGGGGCTTACCATAATTTCTTAAAAAAGGTGTATGATACAGTAATGCTGGTTTCCTCTCATTTGCTTTTATTATCAAGACTTGAGATAGAAAACAATATAGACCTGGAAGTATATGTTTTAGCTGGTAATGAGATACTGGTGACTCTTAGTTATCTTCTGGAAATTGAATATGATGTTATTGGGAATGATTTGGTTAGCTTATGGCTTGTGATCCTTTCTTACTCTGCTATTAATCTTTCTTTCACAAGCGTACCTAAGCAACACTTGTTAACTTCCAAGATTCAAGAGCTTGGATGTCAGCTGGTTGCCTTATATGGTCAACTACGGCAGGTCAACGTTAGTATTTTTGCTCTATGTAAAGCCATGAGGACAGCGATATCAAATGAAGGCGAAACTGAAAAAGATTATGCTAGCTTTATGACATCTTTAGGTCACGAAGCTTATGGGAAATCAGTTGGGATGCTACTTTCTTCACAAGAAATAAAATTTGCAATTCATAAAGCTATTAAATATATACCTGAAGGGCAAGCCAGCGGAATTATACAGCAGTTAACTGAGGACATGACAGAGACTTTAGGATGGCTGAGACAATGTAATATGAACATGAATACAAGAAACAACACAGAGGATTTGAATATGCAAACTGTGCTTCTTGGGAGAGGGCTGTCTGAAGTATATGCTTTGATGTTGGATTCACTGATGATCACATCTGGCAATGCGTTCCAAGTTGGAACTTCGATTGAGAACTTGGTTTCTGTCATACGTCCTTGCATGAGTAATTTGGTTGGGCCACAGGCAGATGGTGCCAAAGCATTCTTTGCTGCTGTCATAGGCAAAACATGTGATGATATGGTTGCAGATGAAGATAATTGTCTTGGATTTGGAGTAACCAGTCATTGGGTCTTTGTTTTTTTCCTTTGCCTGTACATGTCCTGTCGGAACCTGTACAGGCAAGCTATTAGCCTGATGCCTCCAAGTTCATCTAGAAGGATGTCAGCAGCAATTGGAGACTCATTCGTAGCCTATTCTGCCTGTGATTGGATGCAGAGGACTGACTGGAGTGATGAAGGATATTTCTCATGGATAATTCGACCTTCAGCTTCTGTACTTGTTGTTGCCCAATCTGTTTGTAGTCTTTATCATCAAGACACCAGTGTAGGTTGGTACCCTTTAATTTATGTATTGCTCACCATGGCTCTTCAGAGGTTAGTGGATTTGAATAAACAAATAGGCTCCCTTGAGTATTTGTACCAGAGAAATGAGAATTTGATGCAGGTTGAGGTGCTTGGTGATGATGGCTTGTCCGTGTTACAGAAAAAGAGCAAAAAGTATTCGAGGCTTGTCTCTGTTTTGCGGAAAGAAGCAGAAGATCTTACTGATTTCATGATGAGGCATTTTTCTTTGGTAGCTAAACGTCAAGTTTTGAATTCAACTAAAGAAGTTGCGACTTCAAATGATAAATCTACTGTAATGCTTAGTGAGATTGATGATTGGGACTTCAGTATTTGTAACGTGAACAAAAGCAGTGATACGAAGATTGGAAGACAACAAACCAATGGATTTCGGCAGCTAAAGAAAGTGTCCCTGCAACAAATTTCATCAGCTGCTCTAAGTGATCCCATCTTTTATGAACACGGATTTGTCTGCAGGTTTTTGCCATCAAGGTTTTGTCGTGAGTTGAGCGCTTCATTATTATCATCTTTTCATGATATTAATACAAGTTCAACTGATTGGATGGAGGTGTTATGCACACTTGAGCGCTTAACTACTAGTGTTTGCAGTGGAAAACGCACTCCTGATGATAGTTCTCCCCTTGCAAAAACTGTAAATCATTCATCTGATATGTTATATACAGAAGATTGCAAGTGGAAGGGTGATTCATCTCAAAGCAATTTGAGTTTCAGAGCTTGTCAGCATTTGATTGACCTTTTGTGTTGGATGCCAAAAGGGAACTTTAGTTCAAGGTCCTTTTCCCTTTATACGACTCATGTTCTCAAACTTGAAAGGCAATTGGTGAGTGCTTTGTTAGATAATCAAACTGTTCTATGTTCAAATCAATTTGAACTCCTCAAATTGTTTGCATCTTGCCGGAAGGCCTTGAAATATATATTTATGGCTTACTATGAGGCTGGCAATGAACAAAGCTCATCTATTCCACTCCCATCTGAAAGTCAATTTCCCGTTTCATGGCTTTTCAAGTCTATATCAATTGTTAATCGAATTCAAGAAGCTTCTGCCGGAGGTACTGCCACAAAAATTAAGGATATCATCTTCTCCTTGATGGATCATACATCATACTTGTTTTTAACAACTAGCAAATATCAATTTAAGAATGCTTTACGATTAATGGTAATTGACAACAAAACCTGCGAGGAACACCAGGACGTTTGCCATGAACTAAATGATGGAGATGGCGTGTCTTTAGATTCCACTCACTGTGTTGAAGTGTGCAATAGTGCAATTCAAATGAGTATCAGTCTGAAGGAACAGGTGGAGAGTGAACTTATTTCTCTGAGAAAGTCTAATGTGTCAGTTGGAGATGGTAAAAATAGTGCCCAAATGTGTAAAGTTAATTCTCTAGCTTCTTGCCTTAATGGATTTTTGTGGGGCCTAGCCTCTGCTGTTGACCACACTGATTTGAGGAATGGTAACCGTCGCACGAGATCAATGAAGTTGAAATTTGAATACAGTTCCAAACTTAACCTTTGTATGAATGCAACTTCGGAACTGTTAGATCTTATCTTGGAAATGTTTCTTGATAGAGACAGTCAATGGCCAACAAAATTGTGTGATTATCAACCATCTCAAGACCTTTTGGTTGTAGATGAGCTCCCAGTTAAGCACTCTGGCTCTGAGGCTGATACTTCATTTAGTGAACATCGTGAATTAGAATCTTCCCATTGTGATGATGGCAGTGAAAGTGGTGGCACAAATAAAAAAAGGTTGAAATTGGAAAATAAAAGCAGTGTTGCCTCCATTCTCAATGAGGCTAACACAATTGAGATGCAATCGTTTAACCAATCCTTTTTGCAAGGACTGCTGAAAGGATCCTACCCTGATGTAGCATTTGCACTTAAACAGCTATTTCTTGCTGCTTCAGTCATTTTGAGATTGCATAAGCAATATGGTACAATTCCTCTGTCATCAAGTTTTATGGCCATCCTAATTGGCTTTTCAAGATTCTTGTTGCTAGAATTTGAGAATATCGTTGAAGTGCCAGAACCATTTTTGTTTGCATGCTTAGATGGTGTTCTTAAGTATCTGGAGGAATTAGGCCATCTGTTTCCTTCTGCTGATCCAATGAAATCCAGAGACCTATATTCTAGACTTGTAAATCTCCATTTGAAAGCAATGGGAAAGTGTATATCTCTACAGAGAAAAAGAGCTACTTTAGCATCCCATGAGACGGAGTCCACTACTAAGACTCTTGATGGTGGATTATTCGAAGAATCATCTTTTCCTGTAATCTACTGCATGGATGAATTTAAAGCTTCATTGAGAATGTCATTCAAAGTGTTCATAAGGGAAGCCTCGGAGTTGCATCTCTTATCTGCTATTCAAGCTATAGAGAGAGCCCTAGTTGGAGTGCAGGAAGGTTGTACAGCGACATATGAATTATGTTCTGGAAGTGAAGATGGGGGAAGCTGTTCCTCTGTTGTTGCGGCTGGTATTGAATGCTTGGATCTGGTTCTTGAATTTGTTTCAGGACGTAAATGCTTGGGCGTGGTTAAAAGACACATTCAGAGCTTAATTGCTGGTCTGTTTAGCATAGTTCTGCACCTGCAGAGCCCACATATTTTTTATGTAAGAACGATTGACACAAAAGGCAGGAGCGATCCAGATCCGGGAGCAGTCATTCTTATGTCTGTTGAAGTGCTTGCAAGAGTTTCAGGGAAGCATGCTATATACCAAATGAATGCTTGGCATGTAGCACAGTGTTTACGCATTCCTGCAGCACTTTTTGAAGATTTTTCTCTTAAGCTCCCAGGAATTCCTGTTCAATCAGACAATTCCCTTATCTCAACTCCGGAAGCTTCCAATACAGTTGTAGCCACAAGTAATTCGATTATAGACAGACAATTCTTAATAGATCTTTTCGCTGCCTGCTGCCGTTTGTTATTTACCGTTCTCAAGCATCATAAGAGTGAGTGCAAGCAGTCCATTGCTCAGCTACAAGCATCAGTGTCCGTTCTTCTTCATTCCCTTGAAAGAGTAGATCCAGATCCGGAACTTGTGGGTGGTTACTTTTCATGGAATGTAGATGAGGGAGTAAAGTGTGCTTGTTTCCTCCGAAGAATTTATGAAGAGATAAGACAGCAGCGGGAATTTGTAGGGCGACACTGCTCCCTGTTTCTCTCGAATTACATATCGGTTTACTCGGGACTCGGTCCCCTAAAATCCGGGATTAGAAGGGAAATCGACAAAGCGTTAAGGCCCGGTGTCTACGCTCTAATAGATGCTTGTTCAGCTGAGGATCTTCAATATCTTCACACTGTATTTGGCGAAGGTCCATGTAGAAATGCTCTGGCAACATTGCAGCAGGATTACAAACAATTTTTCCAATATGAAGGAAAGGTCTGA 5295 39.98 MVPAKAAEGEDIFGRRAWYGGMISKLEKLKVKNSNMKSKKRKLKSPQTSERPSKSARPLISPEVEVVDGTEQVEKMEQGEVSQEFDESCPWRNLELIFLIQNKEFNQQKKVDAVFSFVNSKWNEKDKYHDKVKMSRLIVFLSDWVQSLLISSEKKAKNDGGKHHNMAIEPCLDYRCWECISMDFCAYMVLIRQLNKLALRFKLGTALSDVHCLLKSINNLLASFMEEKVYLRTEDNSEGAYHNFLKKVYDTVMLVSSHLLLLSRLEIENNIDLEVYVLAGNEILVTLSYLLEIEYDVIGNDLVSLWLVILSYSAINLSFTSVPKQHLLTSKIQELGCQLVALYGQLRQVNVSIFALCKAMRTAISNEGETEKDYASFMTSLGHEAYGKSVGMLLSSQEIKFAIHKAIKYIPEGQASGIIQQLTEDMTETLGWLRQCNMNMNTRNNTEDLNMQTVLLGRGLSEVYALMLDSLMITSGNAFQVGTSIENLVSVIRPCMSNLVGPQADGAKAFFAAVIGKTCDDMVADEDNCLGFGVTSHWVFVFFLCLYMSCRNLYRQAISLMPPSSSRRMSAAIGDSFVAYSACDWMQRTDWSDEGYFSWIIRPSASVLVVAQSVCSLYHQDTSVGWYPLIYVLLTMALQRLVDLNKQIGSLEYLYQRNENLMQVEVLGDDGLSVLQKKSKKYSRLVSVLRKEAEDLTDFMMRHFSLVAKRQVLNSTKEVATSNDKSTVMLSEIDDWDFSICNVNKSSDTKIGRQQTNGFRQLKKVSLQQISSAALSDPIFYEHGFVCRFLPSRFCRELSASLLSSFHDINTSSTDWMEVLCTLERLTTSVCSGKRTPDDSSPLAKTVNHSSDMLYTEDCKWKGDSSQSNLSFRACQHLIDLLCWMPKGNFSSRSFSLYTTHVLKLERQLVSALLDNQTVLCSNQFELLKLFASCRKALKYIFMAYYEAGNEQSSSIPLPSESQFPVSWLFKSISIVNRIQEASAGGTATKIKDIIFSLMDHTSYLFLTTSKYQFKNALRLMVIDNKTCEEHQDVCHELNDGDGVSLDSTHCVEVCNSAIQMSISLKEQVESELISLRKSNVSVGDGKNSAQMCKVNSLASCLNGFLWGLASAVDHTDLRNGNRRTRSMKLKFEYSSKLNLCMNATSELLDLILEMFLDRDSQWPTKLCDYQPSQDLLVVDELPVKHSGSEADTSFSEHRELESSHCDDGSESGGTNKKRLKLENKSSVASILNEANTIEMQSFNQSFLQGLLKGSYPDVAFALKQLFLAASVILRLHKQYGTIPLSSSFMAILIGFSRFLLLEFENIVEVPEPFLFACLDGVLKYLEELGHLFPSADPMKSRDLYSRLVNLHLKAMGKCISLQRKRATLASHETESTTKTLDGGLFEESSFPVIYCMDEFKASLRMSFKVFIREASELHLLSAIQAIERALVGVQEGCTATYELCSGSEDGGSCSSVVAAGIECLDLVLEFVSGRKCLGVVKRHIQSLIAGLFSIVLHLQSPHIFYVRTIDTKGRSDPDPGAVILMSVEVLARVSGKHAIYQMNAWHVAQCLRIPAALFEDFSLKLPGIPVQSDNSLISTPEASNTVVATSNSIIDRQFLIDLFAACCRLLFTVLKHHKSECKQSIAQLQASVSVLLHSLERVDPDPELVGGYFSWNVDEGVKCACFLRRIYEEIRQQREFVGRHCSLFLSNYISVYSGLGPLKSGIRREIDKALRPGVYALIDACSAEDLQYLHTVFGEGPCRNALATLQQDYKQFFQYEGKV 1764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1291828 1301359 + Carg19802-RA Car02g00212 142698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00212 1764 MobiDBLite consensus disorder prediction 30 60 - -
Car02g00212 1764 MobiDBLite consensus disorder prediction 1188 1219 - -
Car02g00212 1764 Pfam Urb2/Npa2 family 1528 1763 IPR018849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00212 - - - bhj:120089295 2420.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g98 . . . . . . Bma05g00411 . . . . . Car02g00212 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00461 . Chy11g00299 . . . . . . Bpe05g00307 . . . . . . . . . . Cpe05g01309 Bhi10g01894 . . . Hepe08g0949 . . Cla02g01117 Cam02g1190 . Cco02g1246 Clacu02g1180 Cmu02g1140 Cre02g1456 . Csa02g01350 . Cme11g00421
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010116 0 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00212 Car_Chr02 FPKM 4.346193 4.827587 576.001587 601.820618 8.306962 7.522649 7.444366 3554.841064 4358.423828 3720.935303