Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00230 ATGGCTGAATCAGATGGACCTCAGAATCAATCTCCTAACCTTCCTTCTAATGGCGCCAAGGATTCCATTGGCAAGTCCTGTAAGGGCTGCCTCTATTACTCTTCACTTCAGAAATCCAAATCTAAATCTCCCACCTGCGTTGGACTCTCCAAAACCCTCGAACAAGTACCAAACTACATAGTGGGAGAAACCGAGCAGGAAGCTTCAAAAGAGGGAAGAAGTCTGACAGATTTCAAGTATGCTTGCGTTGGTTACTCTGTCTACTTAGAAAAGAAAGGTTCATCAAACGACGAACAAAACAAACAAGCTGAGCTGCCGTTCTGCGTCGGTTTAGAGGTATTGTTGGACAAAAGACCTGCGGAACAGTCCCAAGCTCATATACATAATAAAACTGAAGATAGCCCCGCCTTTCCACAGCCACGCAGCTATAAACCGTCGTATCCAGCTGGAGACGAGTTTAAAAGAAACGCAGCCCTTGTTGCATCAGGTGTAGCAAGAAATGTGAACCGAGTTTGCAACTACATAAAAGAGAGCTTCGACGATATCTTATACCCTTACCGGAGACGACCCAAATGA 576 45.14 MAESDGPQNQSPNLPSNGAKDSIGKSCKGCLYYSSLQKSKSKSPTCVGLSKTLEQVPNYIVGETEQEASKEGRSLTDFKYACVGYSVYLEKKGSSNDEQNKQAELPFCVGLEVLLDKRPAEQSQAHIHNKTEDSPAFPQPRSYKPSYPAGDEFKRNAALVASGVARNVNRVCNYIKESFDDILYPYRRRPK 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1497897 1502567 + Carg27197-RA Car02g00230 142716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00230 191 MobiDBLite consensus disorder prediction 1 20 - -
Car02g00230 191 MobiDBLite consensus disorder prediction 1 23 - -
Car02g00230 191 MobiDBLite consensus disorder prediction 120 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00230 - - - cpep:111795126 374.015
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00230 Car20g00694 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00230 Car-Chr2:1497897 Car20g00694 Car-Chr20:3971393 3.24E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g36 . . . . . Bpe12g00093 . . . . Cma02g00363 Cma20g00810 Car02g00230 Car20g00694 . . . . . . . . . . . . . . . . . Cone12ag1183 Cone8ag1229 . Cone10ag1097 Lsi10g00417 . Chy11g00334 . Blo04g00537 Blo13g00535 Bda15g01067 Bda14g00578 Bpe15g00844 . Bma03g00572 . . Cmo02g00366 Cmo20g00818 . . . . Cpe16g00277 Cpe05g01293 Bhi10g01937 Tan05g1234 . . Hepe08g0973 . . . . . . . . . . Csa02g01310 . Cme11g00171
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003684 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00230 Car_Chr02 FPKM 5.166164 5.582346 6.825525 6.374884 3.16327 3.731313 4.394573 12.457173 11.672827 12.944942