Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00234 ATGGGGAGTTTGAGGGCGATTTTGAGTCATCCGGATGACTTTTATCCGCTTTTGAAACTGAAAATGGCTGCAAGACATGCGGAGAAGCAGATCCCGCCGGAGCCTCATTGGGGATTTTGCTATTCCATGTTGCATAAGGTTTCTCGAAGCTTTGCTCTCGTTATTCAGCAGCTTACGCCCGAGCTTCGAAATGCTGTATGCATATTTTATCTCGTTTTGCGAGCCCTCGACACTGTTGAGGATGATACAAGCATAGAAACCGATATCAAAGTGCCCATTCTGAACGCTTTTCACCGTCACATATATAACCCTGATTGGCACTTTTCATGTGGCACAAAGCACTATAAGGTTCTCATGGATGAGTTTCATCATGTTTCAACTGCGTTTCTTGAACTTGCAAAAGGGTACCAGGAAGCGATTGAGGATATCACGAAACGAATGGGTGCTGGAATGGCTAAATTCATTTGCAAAGAGGTAGAGACAGTTGACGATTATGATGAATATTGCCACTACGTAGCTGGACTTGTCGGACTTGGTTTGTCGAAGTTGTTCCACGCATCGAAGTTGGAGGATCTGGCATCCGATTCTCTTTCAAATTCTATGGGATTGTTTCTTCAGAAAACAAACATTATTCGAGATTACTTGGAGGACATCAATGAGATACCGAAATCTCGAATGTTTTGGCCTCGCGAGATTTGGAACAAATATGCTGATAAATTAGAGGATTTTAAATATGAGAAGAATTCGGTCAAGGCTGTGCAATGCCTCAATGATTTGGTCACTAATGCTTTGAACCATGTGGAGGATTGTCTGATATACATGTCTAACTTACGAGATCTTTCCATATTTCGATTTTGTGCAATCCCTCAGATTATGGCGATTGGAACCTTAGCGTTATGCTACAACAATGTTGAAGTCTTCAGGGGTGTCGTCAAAATGCGTCGGGGTCTTACTGCAAAGATCATTGATCGAACGAAAACAGTTGCGGACGTCTATGGAGCTTTCTTTGATTTCTCTGTTATGCTGAAGGCTAAGGTCAACAACAATGATCCTAATGCTGCTAAAACCCTGAGCAGGATTGAGGCAATACAGAAAACGTGCAAGGAGTCGGGTCTCTTGAACAAACGGTTCGTATTTTCCTACTCGGTCTCACTCGTTTCTATGTTTCATCCTTCAAATCCTCTGACCACTCTGAAAATTTTTCATCTTTATTGTCATCCACCAGGAACTTGA 1233 42.42 MGSLRAILSHPDDFYPLLKLKMAARHAEKQIPPEPHWGFCYSMLHKVSRSFALVIQQLTPELRNAVCIFYLVLRALDTVEDDTSIETDIKVPILNAFHRHIYNPDWHFSCGTKHYKVLMDEFHHVSTAFLELAKGYQEAIEDITKRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGLGLSKLFHASKLEDLASDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWNKYADKLEDFKYEKNSVKAVQCLNDLVTNALNHVEDCLIYMSNLRDLSIFRFCAIPQIMAIGTLALCYNNVEVFRGVVKMRRGLTAKIIDRTKTVADVYGAFFDFSVMLKAKVNNNDPNAAKTLSRIEAIQKTCKESGLLNKRFVFSYSVSLVSMFHPSNPLTTLKIFHLYCHPPGT 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1565398 1571266 - Carg24137-RA Car02g00234 142720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00234 410 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
Car02g00234 410 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Car02g00234 410 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00234 K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21] - csv:101205767 727.628
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00234 Car20g00697 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00234 Car-Chr2:1565398 Car20g00697 Car-Chr20:3986654 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g25 . . . Bda08g00956 . Bpe12g00091 Bma05g00429 . . . Cma02g00366 Cma20g00812 Car02g00234 Car20g00697 . . . . . . . . . . . . . . . . . . . Cone3ag1214 . Lsi10g00413 . Chy11g00339 . Blo04g00536 Blo13g00537 Bda15g01071 Bda14g00577 Bpe15g00845 Bpe05g00322 Bma03g00571 Bma08g00783 Sed01g0264 Cmo02g00370 Cmo20g00820 . . . . Cpe16g00273 Cpe05g01289 Bhi10g01944 Tan05g1241 Cmetu11g1041 . Hepe08g0978 . . . . . . . . . . Csa02g01305 . Cme11g00166
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004532 3 1 3 3 3 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 3 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00234 Car_Chr02 FPKM 29.699053 33.93412 91.131119 83.945381 59.333534 71.621239 52.663559 18.149818 17.470827 15.631123