Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00243 ATGGCTTCCCAGCAGCACTTATCCACCATTAAGGGCGCCAAAGTGCTCATGGTTGGCGCGGGAGGAATCGGATGCGAGCTTTTGAAGACTCTTGCTCTCTCGGGGTTTCAGGACATTCATATTATTGACATGGACACCATAGAAGTCAGCAACTTAAATCGACAATTTTTATTCCGAAAATCTCACGTAGGGCAATCAAAGGCTAAGGTCGCTCGAGATGCTGTCTTAAGATTTAGACCTCATGTTAGCATAACCTCGTATCATGCAAATGTCAAGAATCAAGAGTTTAATGTAGATTTCTTTAAGCAATTTAGTGTTGTTTTGAATGGACTTGACAACTTAGATGCGAGGCGACATGTGAATCGTCTATGCTTGGCAGCTGATATTCCGTTAGTCGAAAGTGGGACCACTGGATTCCTCGGACAGGTCACAGTTCATGTCAAGGGAAAAACAGAGTGTTACGAGTGCCAGCCGAAACCGGCCCCAAAAACATATCCTGTCTGTACGATTACTAGTACTCCGTCAAAGTTCGTTCACTGTATCGTTTGGGCGAAGGATCTACTTTTTGCGAAGTTATTTGGAGATAAGAATCAAGAAAACGATCTAAACGTGCGTTCAAGTGATCCAGCAAGTTCGTCTGACCACGCTGAAGATGTTTTTGAACTTAAAAAGGATGAAACTATTGAGCAAGCTGCATCTTTTGGTATTCCTATGCATAGCCTTTTCGAGTCTAAAGGTATTGCTGGTAATATTGTGCATGCTGTTGCAACGACGAATGCCATTATTGCTGGATTGATTGTTATCGAGGCGATTAAGGTGCTACAAAATGATTTAAACAAATACAGGATGACGTATTGCCTCGAACACCCTTCGAGGAAGATGCTGCTCATGCCTGTGGAACCTTTTGAACCTAATAAATCCTGCTATGTTTGTTCTGAGACACCGTTATCGCTCGAGATAAATACACGTCATGCAAAGCTGCGGGACTTCGTTGAGAAGATAGTCAAGGCCAAGCTTGGAATGAACTTTCCACTTATTATGCATGGAGCTTCCCTTCTTTATGAAGTTGGCGATGATCTTGACGAGGACATGGTGGCAAATTACGCTGCAAACCTCGAGAAGGTACTGTCTGAGCTTCCTTCACCTGTCGTTAGCGGGACGATATTATCCGTTGAGGATCTCCAGCAAGAGCTTAGCTGCAGTATCAACATCAAACATAGAGACGAATTTGACGAGGAGAAGGAACCAGACGGTATGGTTCTATCTGGATGGCAGCAAACGACACTGGAAAAGGGTGATAGCAGCAAGACATCATTGGGCAATGGAGAAAGCACCTCGAAGGCGTTGCCCTCGACAACAGATGCTAATAAGAACGATGACGCAGACATCGTTGCTTCTGGAACGAAAAGAAAACTGGACGAGGCATCTTCAGGTGTCGATGCATCAAGTTCAGCTAATGAAGCTAATAGCTTGAAGAAACTTGAAGTGCTCGACGACGACGACGACCTTGTCGTGCTTGATGATGATGGGGATCTGGTAACCAACAAGAAGAAAAGATTGCAGTAA 1566 44.25 MASQQHLSTIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRKSHVGQSKAKVARDAVLRFRPHVSITSYHANVKNQEFNVDFFKQFSVVLNGLDNLDARRHVNRLCLAADIPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDPASSSDHAEDVFELKKDETIEQAASFGIPMHSLFESKGIAGNIVHAVATTNAIIAGLIVIEAIKVLQNDLNKYRMTYCLEHPSRKMLLMPVEPFEPNKSCYVCSETPLSLEINTRHAKLRDFVEKIVKAKLGMNFPLIMHGASLLYEVGDDLDEDMVANYAANLEKVLSELPSPVVSGTILSVEDLQQELSCSINIKHRDEFDEEKEPDGMVLSGWQQTTLEKGDSSKTSLGNGESTSKALPSTTDANKNDDADIVASGTKRKLDEASSGVDASSSANEANSLKKLEVLDDDDDLVVLDDDGDLVTNKKKRLQ 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1646489 1654082 + Carg24147-RA Car02g00243 142729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00243 521 MobiDBLite consensus disorder prediction 428 459 - -
Car02g00243 521 Pfam Ubiquitin/SUMO-activating enzyme ubiquitin-like domain 318 410 IPR028077 -
Car02g00243 521 MobiDBLite consensus disorder prediction 428 500 - -
Car02g00243 521 Pfam ThiF family 5 309 IPR000594 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00243 K10685 UBLE1B, SAE2, UBA2; ubiquitin-like 1-activating enzyme E1 B [EC:6.2.1.45] - csv:101205378 457.988
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00243 Car20g00711 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00243 Car-Chr2:1646489 Car02g00519 Car-Chr2:4080164 1.43E-32 dispersed
Car14g01517 Car-Chr14:12493069 Car02g00243 Car-Chr2:1646489 3.32E-51 transposed
Car16g00880 Car-Chr16:6687019 Car02g00243 Car-Chr2:1646489 1.35E-18 transposed
Car02g00243 Car-Chr2:1646489 Car20g00711 Car-Chr20:4104139 2.04E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g336 Blo02g00838 Blo15g00710 . Bda08g00946 Bpe07g00415 . Bma05g00435 Bma12g00496 . . Cma02g00376 Cma20g00825 Car02g00243 Car20g00711 . . . . . . . . . . . . . . . . . . . . . Lsi10g00399 . Chy11g00352 . . . . . . . . . Sed01g0281 Cmo02g00383 Cmo20g00836 . . . . Cpe16g00263 Cpe05g01278 Bhi10g01969 Tan05g1264 Cmetu11g1045 . Hepe08g0992 . . . . . . . . . . Csa02g01289 . Cme11g00143
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004157 1 1 2 4 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00243 Car_Chr02 FPKM 8.573033 9.199223 93.730324 96.137405 17.407116 12.409905 14.383536 35.349163 35.299 35.498169