Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00249 ATGTCGGACGCTGCGCCAGACCCTCAGCCCAAAGGTGGCAACGAAGCTGAGATGTCGGAGGAAGATAGAAAGATAAGGCTTGCATCTCTTAAGCAGAAAGCGATCAGTGCCTCAAACAAATACAAACTTTCAATGAAGAAACGAGGTAGGAGAAACAGCAGCAGAGTGATGTCTATCTCAATTGAAGACGACATCGACGCAGAAGAATTACAAGCAGTTGATGCCTTCCGCCAAGCTCTGATATTGGAAGAGCTCCTCCCTGCCAGACATGATGATCATCACATGATGCTCAGATTCTTAAAGGCTAGAAAGTTTGATTTTGACAAGACAAAGCAAATGTGGACTGACATGCTTCAATGGAGGAAAGAGTTTGGATCCGACACAATCATGGAGGAGTTTGAATTCAAGGAGGTTGATGAAGTGTTGAAGTACTATCCACAAGGGCATCATGGAGTCGACAAGGACGGACGGCCCGTGTACATTGAACGACTCGGGCAAGTCGATTCCACCAAGCTCTTGGAGGTGACGACCATGGATAGATACATCAATTACCATGTCCGAGAGTTTGAGAGGACGTTTGTTTTGAAGTTCCCAGCTTGCACCATTGCAGCTAAGAAGCACATTGATCAAAGCACGACCATCTTGGATGTCCAAGGAGTGGGACTGAAAAACTTCAACAAATCTGCTAGGGAGCTTATCCAGAGGCTGCAGAAGATTGATGGTGACAACTATCCAGAGACTTTGAACAGAATGTTCATCATCAACGCTGGATCTGGATTTAGGCTGCTGTGGAACACTGTGAAATCATTCCTTGACCCAAAAACGACAGCTAAAATCCATGTTCTTGGCAATAAGTATCAGCCCAAGTTGCTGGAGATCATTGATGCCAGTGAACTTCCGGAGTTCATTGGAGATGGTTCAAAACGGGGAAGGAAAATGCAGGAGAAGGCAAGTGGTTCATTCAAGGCAGAAGCAGCTCCTGTGGCAGCTGCAGCACCAGCTGTTGAATCAGGCATGTCCCCAAAGCAATCAAAATCAACCCCTATCATTCAAGAAGTTCCATCAGGCAGAAAGTATGGCGGTGAGTATCAACAATATGGTCAGTTCATGCCAGTGGTGGACAAAGCCGTGGATCCAAGTTGGGCACTTTCAAGTGAAAAATATGGTCTTTCCAAAGATCCATTTGCTCATGAAAACTACAAAGTCCCGGAAGGGTTCAGCAACCAAATAGTTGGAGGAATAATGGCTTTGGTGATGGGAATAGTGACCATGGTCCGGCTGACAAGAACCATGCCAAAGAAGCTCACTGAGGCAGCCATCTATAGCAGCACCGTCTACTACGACGGTTCGATGGCGAACCGTCCAGCATTACCGTCCCCCGCCGCGGTGCCTCTGAGCGATTACATGACGATGATGAAGCGTATGGCGGAGCTAGAAGAGAGGATCAATGTTCTCAACATGCAGCCGGCAGCACTCGAGGAATCTCTTGCTCGAGAAGCCGAGCTGACCGACTACATCGAGAAGAAGAAGAAGAAGAAGATGGTGAACCCATTCCGCTGGTGA 1563 47.41 MSDAAPDPQPKGGNEAEMSEEDRKIRLASLKQKAISASNKYKLSMKKRGRRNSSRVMSISIEDDIDAEELQAVDAFRQALILEELLPARHDDHHMMLRFLKARKFDFDKTKQMWTDMLQWRKEFGSDTIMEEFEFKEVDEVLKYYPQGHHGVDKDGRPVYIERLGQVDSTKLLEVTTMDRYINYHVREFERTFVLKFPACTIAAKKHIDQSTTILDVQGVGLKNFNKSARELIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQPKLLEIIDASELPEFIGDGSKRGRKMQEKASGSFKAEAAPVAAAAPAVESGMSPKQSKSTPIIQEVPSGRKYGGEYQQYGQFMPVVDKAVDPSWALSSEKYGLSKDPFAHENYKVPEGFSNQIVGGIMALVMGIVTMVRLTRTMPKKLTEAAIYSSTVYYDGSMANRPALPSPAAVPLSDYMTMMKRMAELEERINVLNMQPAALEESLAREAELTDYIEKKKKKKMVNPFRW 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1694477 1700518 - Carg24153-RA Car02g00249 142735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00249 520 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 137 311 IPR001251 -
Car02g00249 520 Pfam CRAL/TRIO domain 143 304 IPR001251 -
Car02g00249 520 MobiDBLite consensus disorder prediction 1 23 - -
Car02g00249 520 Coils Coil 468 488 - -
Car02g00249 520 Pfam CRAL/TRIO, N-terminal domain 89 116 IPR011074 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00249 - - - csv:101214906 818.535
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00249 Car20g00721 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00249 Car-Chr2:1694477 Car20g00721 Car-Chr20:4207140 0 dispersed
Car02g00248 Car-Chr2:1689084 Car02g00249 Car-Chr2:1694477 6.76E-162 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00249 Car_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0