Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00252 ATGGATTCCTGCTTTTTGTCCTTCAAACCCAATTCCCATCTGTGTCTGAATCAGAATGGATTTTATGGGGAGAAAGTTAGAGGAAGTTTGGATAATAATGCTTTGTTTAATCGCTTAGCAAAGAGTTTGAAATCTGAGAATAAAGCTTTGAAGCTCACCTCTAATGGTGCTGCTTCTGTTGTTGCTACACTAAATATTACCAAGGAGGCTGCGAGCATTCAAGCTCCACCGTTTCACACAGTCAAAGTTAACCCCAAGAATGTTGCTTCGATCATATTGGGAGGAGGTGCTGGGACTCATCTGTTTCCCCTTACTAGAAGATTGGCCACACCTGCTGAACGAGTGCTTGTGAGGACGTTGGCCCCCAATAGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAACGAGTGCTAGTGAAGACGCTAGCCCCCAAGAGAGGTGGATTGTGAGATCTCATATTGGTTGGAGAGGGGAACGAGTGAAGACGCTGACTGGTTGGAGAGGGGAACGAGTTCCAGTTGGAGGATGCTATAGGCTTATAGATATTCCAATGAGCAACTGCCTCAACAGTGGGATCAACAAAATTTTTGTGCTTACCCAGTTCAACTCTGCTTCGTTGAATCGTCATATTTCACGAACGTACTTCGGAAACGGTGTCAACTTTGGAGAAGGATTCGTGGAGGTTCTTGCAGCCACTCAAACACCGGGGAAATCCGGGATGTACTGGTTCCAAGGAACGGCAGATGCTGTGAGACAATTTATTTGGGTGTTCGAGGATGCCAAGAACAGAAATGTCGAAAACATTCTAATTTTGGCAGGGGATCACATGTACAGAATGGACTATATGGACTTTGTGCAGAATCACGTGGATAGAAACGCTGATATTTCAATCTCGTGCGCGCCTGTGGACGACAGCCGCGCATCGGACTATGGATTGGTGAAACTCGATAGTAGAGGTCGAATTATCCAGTTTTCGGAGAAGCCAAAGGGTGCCCATTTGAATGCAATGCGAGTAGATACAACTTCATTAGGTTTGTCTCGGGAGGAGGCGTTGAAGTCCCCTTACATTGCATCAATGGGCGTTTACGTTTTCAAAACGGACGTTTTGCTAAACCTTTTAAAGTGGAGATATCCGACATCTAACGACTTCGGCTCAGAAATCATTCCTGCAGCTGTAAAGGAGCACAACGTTCAAGCATTTGTATTTAGAGACTATTGGGAGGACATTGGAACAATCAGGACCTTCTATGAAGCAAACTTGGCCCTCACAGAAGAGTTTCCTAAGTTCGAATTTTACGACCCCAAGACGCCGTTCTATACATCGCCTCGATTTTTACCGCCAACCAAGATTGATAAATGTCAGATTGTTGATGCCATAATCTCACATGGATGCTTTCTGAGAGAATGTAGTATCCAGCATTCGGTAATCGGTGAACGGTCAAGATTAGACTACGGTGTCGAACTTCAGGATACTATAATGATGGGTGCAGACAATTACCAAACTGAACTCGAAATTGCAGCTCTGCTAGCTGAGGGAAAAGTCCCTATTGGGATCGGACAAAACACGAAAATCAGGAACTGCATAATCGATAAGAACGTGAAGATTGGGAAAGACGTCGTCATCATGAACAAAGAAGGCGTGGAAGAAGCAGATCGACCCGAACACGGATTCTACGTTCGGTCGGGAATCACCATTATAATGGAGAAGGCAACGATCAAGGACGGCACGAAACCAGAAGAAGAAGAAGAAGAAGACGACGCAATTGGATCACAGAAAATGGCTCAGCCTGAATCGAACCAACCCCAAAGCACACCGGAGATCGATTCCGCCACCGCTTTACAACAATATTTCGATCGCATCCCCGTCAGTTCCATCTCCGGCATCAAATCCGCCCTCGTCTTGGAAGTGAAGACTGGGGACTGTGTTAAGGATGCAATAAGGGTTATGTTTAAGAAGAATGTGGATTGTGCTCTCATAGCCGATGTCACCAGCGAGGGATTTCCCGAGCGGTTCATTGGTTTTGTTCATCTCTCAAGCTTGCTTCTATGGTGTATTCAGGAGATTGGGAAGTTGGAGGATGAAATCAAATGCATTGAATCAGAGGAAACTCAAGAGAATGTTCGTGGGATTCTGAGTTTTCTTGAACAGAATCCACATATTGGCCAAACCAAGGTGGGTGAGTTAGGGAAAACATTTTTGTGGGATCCTTATTTCCCAGTAGGGATGAGGGATACACTTTTCCATGTTCTGCTATTGCTTTCAAAGCATCGGTTGCAGGCTGTTCCTGTAGTTCGGCTCTGCAATTCTCACGTCGTTGGTTTCATTACACAGAATGCAGTAATTCATATGCTTCTGGAATCAAGTGGCTTGGAGTGGTTTGACAGCATAGTAGACAAAGTAATATCGAAGTTTCGGTTTCATAATGAAGAGCATGTTCTTCATGTCTATGGCGATCAAAACATTATGGAAGCCTTTCAATTGCTATGGGAGAAACAAATGGGTGCAGTTGCTGTAACAGATAGAGAAAGTAAGAGCCTCATTGGTTGTTTGAGGAACAGCGACACATATCTTCTATTGGAGAAGGAAGATCTATTTCAGAATAGAAAGAGGCTAACAGTGAAGGAGTTCATGCATATGGAATCGAGTAAAGAACAAGCAGACTCTAACCCGACAGTCAAAGGGGGCCAGAGGGCACTTACCTTGTCGAGTGCTCGTCCTCTAGTTAAGTGCAGAGTTCCAAATATGCACACTCCAGTCACCATCAAGAGAGATGACACTCTGAAGCAAGTGATGAAAACTATGGCAGAAACAAATAGCTGTTTCAGCTTTCTTGTCAATAGTTCCCACCAAGCAACAGGGATACTCACCGTGGGAGACGTTATAACTCAGTTTGCTCCGCCCTGTATGGATTCAACCATTCAAGGAGGTGGTTTTTTTGAATCTGCTCTGGAACATACTGGCTGTCAGGCTCGTTGCTCGTTTCTTTACTGTAAATGGGTGGATGCCTCACGTTTGCCTTCAGCCCCGGGAGGCAGTGGTGGCAACTGTAACGAGCTTATCTCTCTAGCAGTTCAAACTACTTGGGTCCGAGTTGATGATGGCCAGGCAGTTCAATAG 3123 45.18 MDSCFLSFKPNSHLCLNQNGFYGEKVRGSLDNNALFNRLAKSLKSENKALKLTSNGAASVVATLNITKEAASIQAPPFHTVKVNPKNVASIILGGGAGTHLFPLTRRLATPAERVLVRTLAPNRVDCEIPHWLERGTSASEDASPQERWIVRSHIGWRGERVKTLTGWRGERVPVGGCYRLIDIPMSNCLNSGINKIFVLTQFNSASLNRHISRTYFGNGVNFGEGFVEVLAATQTPGKSGMYWFQGTADAVRQFIWVFEDAKNRNVENILILAGDHMYRMDYMDFVQNHVDRNADISISCAPVDDSRASDYGLVKLDSRGRIIQFSEKPKGAHLNAMRVDTTSLGLSREEALKSPYIASMGVYVFKTDVLLNLLKWRYPTSNDFGSEIIPAAVKEHNVQAFVFRDYWEDIGTIRTFYEANLALTEEFPKFEFYDPKTPFYTSPRFLPPTKIDKCQIVDAIISHGCFLRECSIQHSVIGERSRLDYGVELQDTIMMGADNYQTELEIAALLAEGKVPIGIGQNTKIRNCIIDKNVKIGKDVVIMNKEGVEEADRPEHGFYVRSGITIIMEKATIKDGTKPEEEEEEDDAIGSQKMAQPESNQPQSTPEIDSATALQQYFDRIPVSSISGIKSALVLEVKTGDCVKDAIRVMFKKNVDCALIADVTSEGFPERFIGFVHLSSLLLWCIQEIGKLEDEIKCIESEETQENVRGILSFLEQNPHIGQTKVGELGKTFLWDPYFPVGMRDTLFHVLLLLSKHRLQAVPVVRLCNSHVVGFITQNAVIHMLLESSGLEWFDSIVDKVISKFRFHNEEHVLHVYGDQNIMEAFQLLWEKQMGAVAVTDRESKSLIGCLRNSDTYLLLEKEDLFQNRKRLTVKEFMHMESSKEQADSNPTVKGGQRALTLSSARPLVKCRVPNMHTPVTIKRDDTLKQVMKTMAETNSCFSFLVNSSHQATGILTVGDVITQFAPPCMDSTIQGGGFFESALEHTGCQARCSFLYCKWVDASRLPSAPGGSGGNCNELISLAVQTTWVRVDDGQAVQ 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1718194 1726355 + Carg24156-RA Car02g00252 142738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00252 1040 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 359 369 IPR005836 GO:0005978|GO:0008878
Car02g00252 1040 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 244 252 IPR005836 GO:0005978|GO:0008878
Car02g00252 1040 ProSiteProfiles CBS domain profile. 916 973 IPR000644 -
Car02g00252 1040 MobiDBLite consensus disorder prediction 572 607 - -
Car02g00252 1040 Pfam Nucleotidyl transferase 159 426 IPR005835 GO:0009058|GO:0016779
Car02g00252 1040 Pfam CBS domain 917 963 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00252 K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] - cmax:111499532 778.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00252 Car-Chr2:1718194 Car14g01520 Car-Chr14:12502304 0 dispersed
Car07g00782 Car-Chr7:4098594 Car02g00252 Car-Chr2:1718194 7.08E-09 dispersed
Car18g01079 Car-Chr18:10942750 Car02g00252 Car-Chr2:1718194 1.78E-12 dispersed
Car01g01502 Car-Chr1:12728840 Car02g00252 Car-Chr2:1718194 6.06E-08 wgd
Car02g00252 Car-Chr2:1718194 Car20g00727 Car-Chr20:4240570 2.37E-38 wgd
Car02g00252 Car-Chr2:1718194 Car09g00129 Car-Chr9:620402 2.08E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g360 . . . . . . . . . . Cma02g00389 . Car02g00252 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00382 . Chy11g00369 . . . . . . . . . . Cmo02g00396 . . . . . . Cpe05g01268 . . . . . . . . . . . . . . . Csa02g01274 . Cme11g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013891 0 0 0 0 0 1 1 1 1 1 1 1 1 1 2 1 1 0 1 0 1 1 1 1 1 1 1 2 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00252 Car_Chr02 FPKM 20.972906 25.60685 59.779942 57.950691 12.579427 12.253574 10.96533 55.577278 59.120377 56.173931