Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00254 TGGCGATTGCACATAAGAAAGGCATTATCTCCCAAGCAAAAGGTTACGTCCACTTCTGTTAATGATGCTGAAAATGAGGTTAAGCAAGATGAAGATGATAAATTACTAAACGAGATGGAGGAGCTGACGTATGCTATGGAACGGAAGAAGAAAAGGGAAAAGAAGCTTCTTGCAAAAAGGAAAGCTAAGGACAAAGCTAGGAAAGCGTTGGGGATGCAACTAGATGTCATGGAAGATGGTTATATTGATCACGAGTTATTCTCTCTTTCTAACATCAAGGGTAAGAATGATTTAAGAGTTGTTGATTCAACTGAATATGATGATGATAATGATGAGATGGGAGAACAAGAAAATGGTGTAACCAAAGAGGAAAACCATGGGTCTTCAGATAGTGATATTGACTCTGATGAAGAGCGCAGAAGGTATGATGCACACATGGAGGAATTGTTGGACCAGGCTTATGAAAGCTTTGTTGCCAGAAAGGAAGGAAGTACAAAGCAGCGAAAACGTGCAAAAAAAGCCTATTCTGATGATGCCGAGCTGCTTAAGGAGGATGAGAATGGAGGTGATGGTCCATCTGATTATGACTCTGATGAGAACCTGGTAGACGAGGATAAGAATCCACTGATGGTATCTCTTGATGATGGTGGAGTGCCAACTGAAGAGGAGATCGCAAACAAGTGGTTCAGTCAGGATATTTTTGCTGAAGCAGTAGAGGATGGAGATTTGAAGGAGTTGGTGGATAGCGAAGATGATATGCAGATTGATAGACCAAAAGAAAAAGCTGCTGTTTCCAAGGAAGCCAAACCAAATATTTCAAAGAAAGAAAGAGAGAAGTCGAAAACTTCAACAAATGCAAGAGAAACTGATAAAGAAGACGATGGATTCGAGGTAGTCCCTGCCCCGGCTACGGATTCAAGCGATGATTCATCTTCTGATGAATCTGAGGATGAAGATCCTGACACAAAGGCTGAGATATTGGCATGTGCAAAGAAAATGCTGAGGAAAAAGCAAAGAGAGCAGATTCTTGATGATGCTTACAACAAATACATGTTCGATGATACAGGCTTGCCCTCGTGGTTTTTGGATGAGGAGCGAAGACACCGACAGCCAATAAAGCCTATAACCAAAGAGGAGGTTGCTGCAATGAAAGCACAGTTTAAGGAAATCGATGCCCGCCCTGCTAAGAAGGTAGCTGAAGCTAAAGCACGCAAGAAACGAGTTGCAATGAAGAAACTCGAGAAGGTTCGCAAGAAGGCAAATTCCATCTCAGACCAGGCTGATATATCAGATAGATCAAAGAGGAAGATGATCGATCAACTCTACAAAAAAGCAGTACCCGAGAGACCCAAAAAGGAATTTGTGGTTGCAAAGAAAGGAGTTCAAGTCAGAGTTGGAAAGGGTAAAGTCTTGGTCGATCGACGTATGAAGAAGGACATGAGGAAGCATGGAATGAGCAAGCAGGGAAAAGGTTCAAAGAAGGGAAAGGGAAAGGGAAAGGGAAAGAACTCCAAGGCTCCAAGAGGCAAGGGAGGACCTGCTAAGGCTTCGGGGAAGAAGGGAAGAAAA 1569 42.77 WRLHIRKALSPKQKVTSTSVNDAENEVKQDEDDKLLNEMEELTYAMERKKKREKKLLAKRKAKDKARKALGMQLDVMEDGYIDHELFSLSNIKGKNDLRVVDSTEYDDDNDEMGEQENGVTKEENHGSSDSDIDSDEERRRYDAHMEELLDQAYESFVARKEGSTKQRKRAKKAYSDDAELLKEDENGGDGPSDYDSDENLVDEDKNPLMVSLDDGGVPTEEEIANKWFSQDIFAEAVEDGDLKELVDSEDDMQIDRPKEKAAVSKEAKPNISKKEREKSKTSTNARETDKEDDGFEVVPAPATDSSDDSSSDESEDEDPDTKAEILACAKKMLRKKQREQILDDAYNKYMFDDTGLPSWFLDEERRHRQPIKPITKEEVAAMKAQFKEIDARPAKKVAEAKARKKRVAMKKLEKVRKKANSISDQADISDRSKRKMIDQLYKKAVPERPKKEFVVAKKGVQVRVGKGKVLVDRRMKKDMRKHGMSKQGKGSKKGKGKGKGKNSKAPRGKGGPAKASGKKGRK 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1737841 1740795 + Carg22939-RA Car02g00254 142740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00254 523 MobiDBLite consensus disorder prediction 158 218 - -
Car02g00254 523 MobiDBLite consensus disorder prediction 245 298 - -
Car02g00254 523 MobiDBLite consensus disorder prediction 9 32 - -
Car02g00254 523 MobiDBLite consensus disorder prediction 245 325 - -
Car02g00254 523 MobiDBLite consensus disorder prediction 105 146 - -
Car02g00254 523 MobiDBLite consensus disorder prediction 161 190 - -
Car02g00254 523 Pfam Spb1 C-terminal domain 290 485 IPR012920 GO:0005634|GO:0006364|GO:0008168
Car02g00254 523 MobiDBLite consensus disorder prediction 467 523 - -
Car02g00254 523 Coils Coil 396 416 - -
Car02g00254 523 MobiDBLite consensus disorder prediction 480 505 - -
Car02g00254 523 MobiDBLite consensus disorder prediction 115 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00254 K14857 SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-] - csv:101209556 731.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00254 Car20g00730 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00254 Car-Chr2:1737841 Car20g00730 Car-Chr20:4258745 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g363 Blo02g00806 . . Bda08g00942 . . Bma05g00441 . . . Cma02g00391 . Car02g00254 Car20g00730 . . . . . . . . . . . . . . . . . Cone12ag1158 Cone8ag1207 . . Lsi10g00379 . Chy11g00372 . . . . . . . . . Sed01g0297 Cmo02g00398 Cmo20g00854 . . . . Cpe16g00247 Cpe05g01265 Bhi10g01995 Tan05g1293 Cmetu11g1187 . Hepe08g1009 . . . . . . . . . . Csa02g01268 . Cme11g00124
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007268 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00254 Car_Chr02 FPKM 9.915422 11.60741 2.560146 4.24442 7.600973 5.811447 5.012555 4.763027 5.335363 4.367153