Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00268 ATGGTAGTAGCTTCAGCTTTTACTGCATCTCTCTGTTTCTCTGTCTCTTCGCACAATAGAGCATCATCCGTTCCTCAGCTTTCTAGCAGAAATTCACGCAGGTCGATAGTTTCTGCCATCCCGAGACCGTATGGAGACTCTTCAACAATTGGATTATCGAGCAAAACAGTTGGGGCACCTTTAAACCTTGACGAAGATTTTCTTCACACCAGTACAAGTTATGGACCTATAATGGCCAAGAAAGGCAATCCACCAATTATGCCTGCAGTGATGACACCAGGAGGGCCTTTGAATCTCTCTTCTGTGTTATTTAGGAATCGTATCATATTTATTGGTCAACCCATCAACTCCAACGTTGCACAGCGAGTTATATCACAGCTTGTGACACTAGCAACCATTGATGAGGAGTCGGATATCCTGGTATATCTGAATTGCCCTGGTGGAAGTACCTACTCAATATTAGCAATTTATGATTGCATGTCTTGGATAAAGCCTAAGGTTGGCACAGTGTGCTTCGGAGTTGCTGCAAGCCAAGGAGCTCTTCTCCTTGCAGGTGGAGAAAAGGGAATGCGCTATGCTATGCCAAATTCTCGAATTATGATACATCAGCCACAAAGTGGATGTGGGGGTCATGTGGAAGATGTTAGACGCCAAGTCAATGAAGCAGTTCAATCACGCCATAAAGTTGACATGATGTATGCTGCATTTACTGGCCAACCATTAGAGAAAGTACAACAATACACAGAGAGGGATCGGTTTTTGTCTGTTTCTGAGGCTTTGGAGTTTGGGCTTATCGACGGTGTGCTCGAAACAGAATACTGA 822 44.16 MVVASAFTASLCFSVSSHNRASSVPQLSSRNSRRSIVSAIPRPYGDSSTIGLSSKTVGAPLNLDEDFLHTSTSYGPIMAKKGNPPIMPAVMTPGGPLNLSSVLFRNRIIFIGQPINSNVAQRVISQLVTLATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1816775 1820827 - Carg22953-RA Car02g00268 142754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00268 273 Pfam Clp protease 99 271 IPR023562 -
Car02g00268 273 ProSitePatterns Endopeptidase Clp histidine active site. 191 204 IPR033135 -
Car02g00268 273 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 86 272 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00268 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101213940 469.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00268 Car-Chr2:1816775 Car16g01144 Car-Chr16:9768451 4.56E-50 dispersed
Car02g00268 Car-Chr2:1816775 Car01g00257 Car-Chr1:1426744 4.93E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g569 . . . Bda08g00901 . . Bma05g00475 . . . Cma02g00409 . Car02g00268 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00353 . Chy11g00395 . . . . . . . . . . Cmo02g00413 . . . . . . Cpe05g01249 Bhi10g02028 Tan05g1325 Cmetu11g1874 . Hepe08g1028 . . . . . . . . . . Csa02g01243 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011349 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00268 Car_Chr02 FPKM 12.335532 12.437819 14.735474 16.818256 14.936394 14.534348 12.497252 19.361984 21.143478 19.431797