Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00281 ATGGGCAAAGGCGGTGGATGCGTACCTAGCAAGAACAGAGCATCGATTGCCGTCTCCGATCCAGATCCCGATCATCCTCCGCCGCCACAGGAGCAAAAATCCGCCGCTCAATCTCACAATCCGGCCGGAGAAATCGCGAGGAATCTGAGGATCTTCATCGTGTATTACTCGATGTACGGTCACATCGAGCTATTGGCGAAGAGGATCAAGAGAGGAGTCGATTCGGTTGATGGCGTTGAAGGTATTCTGTTTAAGGTGCCGGAGACGTTGCCGCCGAAGACGCTGGAGCAGATGAAAGTTCCGGCGAAGGACGACAGCGTGCCGGTGATTGAGGTGGGGAAGATGGTAGAGGCGGACGGATTCTTGTTTGGATTTCCAACGAGGTATGGATCCATGGCGGCGCAGATGAAATCGTTTTTCGATTCGACGATTGATCTTTGGAAGGATCAGAGATTGGCCGGCATTCCGGCCGGATTGTTCGTCAGTACCGGAACCCAGGGCGGCGGCCAAGAGACGACGGCTTTAACAGCAGTGAGTCTTCTAGCACACCATGGAATGGTATATGTTCCAATAGGTTATACATTTGGGAGTGAAATGACGAATCTAGACACCATTAGAGGAGGGTCCCCTTATGGGGCTGGGGTTCTCTCTGGTGATGGCTCAAGACCTCCATCTTCCACTGAGCTTCATCTTGCTCATCATCAAGGCAAGTACATGGCTACCTTACTTAAAAGATCTCTCCCCCGCTCTTGA 753 52.19 MGKGGGCVPSKNRASIAVSDPDPDHPPPPQEQKSAAQSHNPAGEIARNLRIFIVYYSMYGHIELLAKRIKRGVDSVDGVEGILFKVPETLPPKTLEQMKVPAKDDSVPVIEVGKMVEADGFLFGFPTRYGSMAAQMKSFFDSTIDLWKDQRLAGIPAGLFVSTGTQGGGQETTALTAVSLLAHHGMVYVPIGYTFGSEMTNLDTIRGGSPYGAGVLSGDGSRPPSSTELHLAHHQGKYMATLLKRSLPRS 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1903515 1905421 + Carg22966-RA Car02g00281 142767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00281 250 MobiDBLite consensus disorder prediction 1 40 - -
Car02g00281 250 Pfam NADPH-dependent FMN reductase 64 192 IPR005025 GO:0016491
Car02g00281 250 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 50 244 IPR010089 GO:0003955|GO:0010181
Car02g00281 250 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 9 246 - -
Car02g00281 250 SUPERFAMILY Flavoproteins 50 245 IPR029039 -
Car02g00281 250 PANTHER NAD(P)H DEHYDROGENASE (QUINONE) FQR1-LIKE 2-RELATED 9 246 - -
Car02g00281 250 Gene3D - 47 246 IPR029039 -
Car02g00281 250 ProSiteProfiles Flavodoxin-like domain profile. 51 239 IPR008254 GO:0010181
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00281 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - csv:101211762 388.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00281 Car-Chr2:1903515 Car03g00700 Car-Chr3:6122307 1.65E-110 dispersed
Car02g00281 Car-Chr2:1903515 Car16g00865 Car-Chr16:6401076 1.30E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g556 . Blo15g00688 Bda06g00948 . Bpe07g00459 . . Bma12g00546 . . Cma02g00425 . Car02g00281 . . . . . . . . . . . . . . . . . . . . Cone3ag1142 . Lsi10g00335 . Chy11g00416 . . . . . . . . . . Cmo02g00426 . . . . . . Cpe05g01236 . . . . . . . Cla09g01743 Cam09g1834 Cec09g1895 Cco09g1987 . . Cre01g0676 . Csa02g01222 . Cme11g00475
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00281 Car_Chr02 FPKM 2.61534 3.032742 7.981278 8.544481 45.512924 49.66679 46.303715 4.572835 4.66285 4.4595