Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00284 ATGGATGGGCTTCTGAAGAAGTTTTTTCATGAGAAGCCTTCTTCTTCGGTTGGTAATGAGGATTTTAACCCTGAATATTCTTTTGCAATTGAGTATACAGGTCCTGGAATCAATTACGACATTCCCCGTGCAGTTCCTATCAATATCGATTATATTCCAACTGCTTCTGTTGTTGTTTCATCGTCTCAGTTCAGGGATGATGTATCAACGCTTCCAGTTATACAACCCATCGTTGGTAGATTTAGTAGGAGCTCAAGTTTGAAAGCCAATTTAGTGATTTCTTCAACCTCTGATATCCAGGAAGATGGGCCTGTTTGCCTTGATGCCAATAAGAAAGATAATGGGAAAGATAAATGTGATATCATTGAAAGTTCTGGTGAACTTGAGAATTTCAATAAGCTAAAGGGAAGATTAGAAGGCGGGTTAGAATCACTGGAAATTAAGAATGAAGAGGATTTTCAAGGTTACACGAATTCGAGTGATTCAGAATCGGCAGAATCAGGTTTGAGCTCGTCTTCTGGGATTTTTGCTGTAAGAGGGGGAGAGGAAGTTGAAAATGAAATCCAGCCTTGGCATGGTAGGAAGCCATCAGCTGTTACTTTTCTGGATCCCCATTCGAGCAGCACGATTTCTGACGAGGCAGAATCGAGTCAATCTGATGCTGAAAGTATCCATGACATGCCAAGAGCTGAAAGGAAGGGGAAGAAAGGATCGTGCTACTACTGCCTTAAAGGAAACCGTTTCACTGAAAAGGAAGAGTGTATTGTCTGCGGAGCCAAATATTGTATTGCCTGTGTAATTAGGGCAATGGGATCAATGCCAGAAGGAAGAAAGTGTATCACTTGTATTGGGTTCAGGATTGATGAATCAAGAAGAAACAACCTGGGTAAGTGCACTAAAGTGCTCAAGAGGCTGTTTACTGACTTGGAAGTTAAGAACACTCTGACTCGGGAAAAAGAGTGTGAAATAAATCAGATACCTGCAAGACTTGTTTATATCAATGACCATCCTTTAAGTCGACAGGAACTGCTTATGCTGCGAAGTTGCCAAAAGCCACCAAAGAATCTAAAACCAGGACGATATTGGTATGACAAAGAATCGGGCTTCTGGGGAAAGGAAGGACGTGGACCATGTCAGATAGTTAGCACCCATCTAGAGGTAGGAGGCCGCATTAAGAGGGATGCTAGCAATGGCAATACAAATGTTTGCATCAACAATCGAGAGATCACGAAAAAAGAGCTGCGGATATTGAAGCTGGCTGGAGTACCTTGTGAAGGAAGACCTTCTTATTGGGTTAGCGCAGATGGATCATATCAGGAAGAGGGAATGAACAATGGGGGGAAAATATGGGACAAGCCTACAACGAAGCTTGCATGTGCCGTTTTTAATTTACCTATTCCTTCTAGTTCTGTTCATTCTGGAGAGGAAAAGGTGGATAAAGCTAGTTCTTCTCCTGAGCCGAAAATGCTTCATAAACTTCTACTTGTTGGCCATGACCAATCTGGCACGAGTACCATATTCAAGCAGGCCAAGCAAATATATAAAGTTCCTTTCTCTGATGACGAGCGTCAAGCCATTAAGTTCCTGATTCAAAGAAAATTGTATTGGTATATTAGTATACTACTGGAAGGTCGGGAACGTTTTGAAGAAGAGGTTTTGTTGGATGAGAAGAATAAACAACCTGTGAATGATCCGTCTACCTCATCAGCTTCAGGGAATGACGTTCAGTTTGAGCGTAAAACCATCTATTCCTTTGGCCCTAAGCTGAAAGTGTTCGCCGACTGGCTTCTTCAAGTCGTAGTGTCAGGTTACTTTGAGACAACATTCCCAGCAGCTACCCGTGTGTATGCCCAATCAGTGGAAGAGTTGTTGAAGGACGAAGCGTTTCAAGCCACATACAGTAGAAGGAACGAACTAGAAATGCTCCCAAGAGTTTCAACTTATTTCCTTGATCGGGCTGTTGACATTTCAAGTGAAGACTATGACCCTTCTGACAACGATATCTTGTATGCCGAGGGAATCTCCTCATGTAAGAGCCTCAGTGACATGGAGTTCTCGTTCCCCGAGTCACGACAAGACTCCCTTCTCGATCCACCTTATCAGCATGACTCGTCAATAAGGTACCAGTTGATTCGAGTCCATCCCAGTACCCTGGGAGAGAACTGCAAACTGTTGGACATGTTTGAAGACATGAGCATTATCCTGTTTTGTGTTGCTCTGGTCGATTACGACGAATTCGACGAAGATGACAATGGAGTTTTAGTCAATCGGATGATCGCAAGCAAACAACTCTTCGAAAGGATCGTGACCGATCGAGCATTGAGTGGGAAGAACTTCCTTCTCATACTCAACAAGTTCGATCTCTTCGAAGAAAAAATCATCCAAGTTCCTCTTTCGCAATGCGAGTGGTTCGACGACTTCAATCCAATGATCACGCCAAATTCAACCGGAAGAAGCAGCAGCAGCACCACCACAAACCCGTCGTTGGCTCAACGAGCGTTTCAGTACGTAGCGGTGAAATTCAAGAGATTGTTCTATTCTCTATCAGACAAAAAGCTGTTTGTTTCACAAACTACAGGGATGGAACCTGAAAATGTGAATGCAGCTCTCAGATATGCAAGGGAGATAATCAAATGGGAAGTAGACAAGCCTAACATCAGCATTACTGAAATTTCAACGGCCAGTGCTGATGCAAGCAGCTTTTTATAG 2709 43.04 MDGLLKKFFHEKPSSSVGNEDFNPEYSFAIEYTGPGINYDIPRAVPINIDYIPTASVVVSSSQFRDDVSTLPVIQPIVGRFSRSSSLKANLVISSTSDIQEDGPVCLDANKKDNGKDKCDIIESSGELENFNKLKGRLEGGLESLEIKNEEDFQGYTNSSDSESAESGLSSSSGIFAVRGGEEVENEIQPWHGRKPSAVTFLDPHSSSTISDEAESSQSDAESIHDMPRAERKGKKGSCYYCLKGNRFTEKEECIVCGAKYCIACVIRAMGSMPEGRKCITCIGFRIDESRRNNLGKCTKVLKRLFTDLEVKNTLTREKECEINQIPARLVYINDHPLSRQELLMLRSCQKPPKNLKPGRYWYDKESGFWGKEGRGPCQIVSTHLEVGGRIKRDASNGNTNVCINNREITKKELRILKLAGVPCEGRPSYWVSADGSYQEEGMNNGGKIWDKPTTKLACAVFNLPIPSSSVHSGEEKVDKASSSPEPKMLHKLLLVGHDQSGTSTIFKQAKQIYKVPFSDDERQAIKFLIQRKLYWYISILLEGRERFEEEVLLDEKNKQPVNDPSTSSASGNDVQFERKTIYSFGPKLKVFADWLLQVVVSGYFETTFPAATRVYAQSVEELLKDEAFQATYSRRNELEMLPRVSTYFLDRAVDISSEDYDPSDNDILYAEGISSCKSLSDMEFSFPESRQDSLLDPPYQHDSSIRYQLIRVHPSTLGENCKLLDMFEDMSIILFCVALVDYDEFDEDDNGVLVNRMIASKQLFERIVTDRALSGKNFLLILNKFDLFEEKIIQVPLSQCEWFDDFNPMITPNSTGRSSSSTTTNPSLAQRAFQYVAVKFKRLFYSLSDKKLFVSQTTGMEPENVNAALRYAREIIKWEVDKPNISITEISTASADASSFL 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1914389 1919314 + Carg22969-RA Car02g00284 142770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00284 902 MobiDBLite consensus disorder prediction 153 172 - -
Car02g00284 902 ProSiteProfiles G-alpha domain profile. 489 889 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Car02g00284 902 MobiDBLite consensus disorder prediction 201 217 - -
Car02g00284 902 Pfam G-protein alpha subunit 488 877 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Car02g00284 902 MobiDBLite consensus disorder prediction 188 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00284 - - - csv:101202880 1419.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00284 Car20g00758 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00284 Car-Chr2:1914389 Car16g01126 Car-Chr16:9660387 0 dispersed
Car16g00498 Car-Chr16:3170117 Car02g00284 Car-Chr2:1914389 1.60E-10 dispersed
Car02g00284 Car-Chr2:1914389 Car20g00758 Car-Chr20:4444692 0 wgd
Car02g00284 Car-Chr2:1914389 Car03g00907 Car-Chr3:7161272 2.50E-09 wgd
Car02g00284 Car-Chr2:1914389 Car07g00719 Car-Chr7:3707725 2.18E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00284 Car_Chr02 FPKM 7.138792 8.191914 16.170298 14.62276 11.468696 12.010921 11.141634 15.627 14.903576 14.493062