Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00288 ATGAAATATTTGAATATTCTCATCTTCTTCCTCTTCCTTTCTTCTACAGTAACCCTAACGCGATCAAATCCGCCTCCGTCTGGCGGCGGTGATGGTAAGCACTTCGTTCTGGTTCACGGAGCTTGCCTTGGTGCCTGGTCGTGGTACAAGCTATCGACGCTGCTGCGCTCGGCCGGCCACCGCGTGACGGCGCTGGACATGGCCGGTGCCGGAATTGATCCGAGGGAGGCGGAGGATCTGAGATCGTTCTCCGAATATGTTCAGCCGTTGACGGATTTCATGGCGAAATTGCCGGCGGAGGAGAAGGTGATCCTGGTCGGGCACAGCCAAGGCGGGCTGTGCATTTCTAAAGCGATGGAGGATTTTCCGGATAAAATTTCTGTGGCTGTTTTCGTCGCCGCCGCCATGCCTGGCCCATCCTTGAACGCTTCATTTCTTCTGGAACAGTTTCGCAAGAGGATAGACTTTGGGCCTGATACCCGTTATACATTCGGTAATGGGCCCAAAAGCCCGCCAACAACTTTGACATTCGGCCCACTTTTCTCGGCCACTAAACTATTCGATAGAAGTCCCAAACAGGACTTGACATTGGGCAACACATTAATGAGACAAACCCATTTGTTCGTGGGACGACAATGGAGCAAAGATCTTCCTTTGACGACACAAAGGTATGGGTCTGTTAAACGAGTTTTTGTTGTTTCAGAAAAGGATAAGGTTATAAAGAAAAGCTTCCAACAATGGGTGATTAAAAGAAATCCTCCTACTGATGTGGTGGAAGTTAGAGGATCCGATCATATGGTGATGATATCTAAGCCGTTCGATCTCTTCAACAAACTTTCTCACATTGCCCGACGTTATTCTTAA 864 48.84 MKYLNILIFFLFLSSTVTLTRSNPPPSGGGDGKHFVLVHGACLGAWSWYKLSTLLRSAGHRVTALDMAGAGIDPREAEDLRSFSEYVQPLTDFMAKLPAEEKVILVGHSQGGLCISKAMEDFPDKISVAVFVAAAMPGPSLNASFLLEQFRKRIDFGPDTRYTFGNGPKSPPTTLTFGPLFSATKLFDRSPKQDLTLGNTLMRQTHLFVGRQWSKDLPLTTQRYGSVKRVFVVSEKDKVIKKSFQQWVIKRNPPTDVVEVRGSDHMVMISKPFDLFNKLSHIARRYS 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1943807 1946156 + Carg22973-RA Car02g00288 142774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00288 287 Pfam Alpha/beta hydrolase family 35 277 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00288 - - - csv:101207795 441.039
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00288 Car11g01077 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00288 Car-Chr2:1943807 Car20g00865 Car-Chr20:7647643 8.72E-51 dispersed
Car11g01077 Car-Chr11:8365211 Car02g00288 Car-Chr2:1943807 3.89E-16 transposed
Car13g00398 Car-Chr13:6522042 Car02g00288 Car-Chr2:1943807 6.53E-20 transposed
Car02g00288 Car-Chr2:1943807 Car03g00901 Car-Chr3:7128363 2.45E-59 wgd
Car02g00288 Car-Chr2:1943807 Car07g00712 Car-Chr7:3670594 5.44E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g491 . . . . . . . . . Cmo11g01336 Cma02g00433 . Car02g00288 . . . . . . . . . . . Cla02g00571 Cam02g0601 Cec02g0601 Cco02g0612 Clacu02g0597 Cmu02g0595 Cre02g0924 . . . . . . . Cme01g00018 . . . . . . . . Sed01g0330 Cmo02g00435 . . . Car11g01077 . . . Bhi10g02066 Tan05g1380 Cmetu11g1580 . Hepe08g1056 . . . . . . . . . Lsi11g01039 . Chy01g00023 Cme11g00501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00288 Car_Chr02 FPKM 1.70614 3.650761 0.0 0.51166 0.0 0.0 0.0 2.796895 1.530813 2.350965