Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00296 ATGGCGGAAGCGAATTCGGAAGAGAAGGTGAATGAGAATCCTGAAATGGAGGTCAAAGAAGCTGTGAATGGCGATGGTGTTGGTAGTAGTAATAGCAATGGTAATCTTTCCTTCAAATTTAATGCTCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTACCGGCTATTTTCATCCCTATTTTCATTTTCTTGGTGGGGCTCCTGCTACTTCAGACTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCTCTCCCAAATTTCTCTAAGAACGCCCGTTCGGAGGATATTCAGCAAAAAATCGTCAAACAGGTAGAATATCAGTTCAGTGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAACATTAGCAAAGATCCTGATGGTTATGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTAAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGATCCTCTTCAAAGCTTGTTGTTAGTGCTGATGGGAAGAAAGTTAAACGTAAGCATCCGTTTACGGACAAGGACAAAGAGGAATTGCTGTCTCGTACAGTCGTTGTGGAGAATTTGCCCGACAATCACTCGCACCACAACCTCGAGAAAATATTTAGCGTCATTGGGAGTGTGAAGACGATCCGAATCTGTCATCCCCCGGAATCAAATCCGTGCTGCTCTAAAGGTGAATTATTTATCAGTAACAAGCTTCATGCACTTGTGGAATACGAGACCGTAGAGTTGGCTGAAAGAGCGGCTGAGAAGTTAAATGATGAGAGAAACTGGAGGAAAGGGCTCCGAGTAAGGTTATTACTCAGACGCTCGCCAAAATCAGTTCTGAAGACTCGAAAATCAGAATTTGAAAGTATTCTGGATGAAGATGATTCACCATCTCCTGTATCTATTGAACAAGAATCTCCTCAGTCAAATATTGCTGAACTAACTACTGATTTCAGTTCTGAGGAGAACTCAACATCATCTAAAAAGGGCTGGGGTCGAGGCCGTGGGAAGGGTCGTGGACGAGTTCATAACCATCTTGATCGTAGCTATAGCTTACCAGTTACAGCTATGCAATCGAGTAGTCAGATTCTATGTGAAGCATCGTCCAAACTCACTTCTAAGAGTCCGAGAATGCCGGATGGGACGAAAGGTTTCACCATGGGACGAGGCAAGCCATTAAATTCTAAATCTCTTTATCCTTTTCATATTGTCTTGACCTGTTCTTCGACGTGTTGGAAATCTGTGCAACCATCGGCGAGGGGACGAAAATCGCACGATTCCAGTTGTTGTAGGGTGTTTGCTGTCGTGTTGCACCTTACCATGGTTTACCATTGTGATTCCTTGGCCGCAACTGGATTTTTCCCAATGATCGTTGCTGCCATCTTCATAGAGGAATGA 1443 43.45 MAEANSEEKVNENPEMEVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKSEFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLYPFHIVLTCSSTCWKSVQPSARGRKSHDSSCCRVFAVVLHLTMVYHCDSLAATGFFPMIVAAIFIEE 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1991228 1994798 + Carg22981-RA Car02g00296 142782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00296 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 273 IPR000504 GO:0003723
Car02g00296 480 MobiDBLite consensus disorder prediction 1 19 - -
Car02g00296 480 Pfam La domain 112 169 IPR006630 -
Car02g00296 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 290 IPR000504 GO:0003723
Car02g00296 480 MobiDBLite consensus disorder prediction 298 359 - -
Car02g00296 480 MobiDBLite consensus disorder prediction 315 345 - -
Car02g00296 480 ProSiteProfiles La-type HTH domain profile. 102 193 IPR006630 -
Car02g00296 480 MobiDBLite consensus disorder prediction 1 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00296 K15191 LARP7; La-related protein 7 - csv:101217948 623.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00296 Car-Chr2:1991228 Car02g00313 Car-Chr2:2145497 0 dispersed
Car20g00010 Car-Chr20:42392 Car02g00296 Car-Chr2:1991228 2.38E-06 dispersed
Car02g00296 Car-Chr2:1991228 Car07g00100 Car-Chr7:619949 6.62E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00296 Car_Chr02 FPKM 0.893584 0.0 0.0 0.0 0.0 0.0 0.0 3.579897 3.930256 3.7278