Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00338 ATGGCGGTGGAGCTTCTCTCAGCCTACACCAACGCCCATCTCTCCGCCGCAATGGACCAAGACTCCGCCGTCCATGAAGCGGCCTCCGGTATCCACACCCTCAAAAAGCTCATCTCATTACTCTCCCACTCCCCCCCTTCTAACCTGGACTCCGATTGCCAAGCCGTTGCTAACGCCGCCGTCTCCCATTTCAAAAAGGCCATTTCTCTCCTCGGCCACTCCCCTCGTACCGGCCACGCTCGATTCCGCCGCGCCCCTTTAGATTCCTCTCAAATTTACAACGCAACCCCCATTCAGCAAATCCCTCCGCCGCCCCTTGAATCTGCCACCACCATTAATTTCTCTCATTCCTCGTTTCCCGCCGCCGACTCTGAAATTAACCTCCAACACCAACCCTCTTCCTCTTCTTTTCAAATCACTGATCTCTCCAGGGTTTCCTCTGTTGTCTCTAAGCCCTCTTCTGGCTCCAAGAGAAAGTGCGGCTCTGAAAATTTGGGCTCTGGGAAGTGCGGCGAATCCTCCGGTGGTCGATGCCATTGCTCCAAGAAGAGCAGAAAAATGAGGTTCAAAAGAGTGGTGAGAGTTCCAGCTATTAGCTCAAAGAACGCTGATATTCCTCCTGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTATAAATGTAGCAGTTTAAGAGGATGCCCTGCTAGAAAACATGTGGAGAGAGCTTCAGATGATCCATCTATGTTAATAGTGACATATGAAGGCGATCATAATCACTCTCAATCAGTGGCAGAGGCCTCAAGTCTCATCCTTGAATCATGGTGA 840 50.36 MAVELLSAYTNAHLSAAMDQDSAVHEAASGIHTLKKLISLLSHSPPSNLDSDCQAVANAAVSHFKKAISLLGHSPRTGHARFRRAPLDSSQIYNATPIQQIPPPPLESATTINFSHSSFPAADSEINLQHQPSSSSFQITDLSRVSSVVSKPSSGSKRKCGSENLGSGKCGESSGGRCHCSKKSRKMRFKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2396518 2398388 - Carg25158-RA Car02g00338 142824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00338 279 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 17 278 - -
Car02g00338 279 Pfam WRKY DNA -binding domain 208 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g00338 279 Pfam Plant zinc cluster domain 157 204 IPR018872 -
Car02g00338 279 ProSiteProfiles WRKY domain profile. 201 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g00338 279 MobiDBLite consensus disorder prediction 148 168 - -
Car02g00338 279 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 278 IPR044810 GO:0003700
Car02g00338 279 SUPERFAMILY WRKY DNA-binding domain 202 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g00338 279 SMART WRKY_cls 206 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g00338 279 Gene3D WRKY domain 191 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00338 Car03g00867 CCT
Car02g00338 Car03g00867 ECH
Car02g00338 Car20g00828 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00338 Car-Chr2:2396518 Car09g00212 Car-Chr9:1055588 2.38E-82 dispersed
Car02g00338 Car-Chr2:2396518 Car20g00828 Car-Chr20:5497044 1.23E-178 wgd
Car02g00338 Car-Chr2:2396518 Car03g00867 Car-Chr3:6952711 4.41E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2952 PF03106 WRKY 2.40E-26 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00338 - - bhj:120089490 488.804