Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00402 ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCCAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACAGCTCCCACTACCCTCCACTCCCCTTCTTCTCCGACTTCTCATCTCCCTCCTTCCACACCGCACAGCCAGTGCTGCCGAACCAACAGAACCGGCAGAAGCGCGGCGGGGGCGGGGGCGGGGGCGGGGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAGGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCGGCGCGGCAGCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATGCTAATACTACTAATAATAATAACAACTGTCCTAACCTTAGCTACTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGCCTGGCTCTTTGCAAATGCATTGA 624 53.53 MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNCPNLSYSSALFKACQMPHAPSMPGSLQMH 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3100912 3101535 - Carg11647-RA Car02g00402 142888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00402 207 Pfam Helix-loop-helix DNA-binding domain 115 155 IPR011598 GO:0046983
Car02g00402 207 MobiDBLite consensus disorder prediction 48 63 - -
Car02g00402 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 155 IPR011598 GO:0046983
Car02g00402 207 Coils Coil 145 165 - -
Car02g00402 207 MobiDBLite consensus disorder prediction 48 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00402 Car-Chr2:3100912 Car07g00781 Car-Chr7:4096880 1.45E-46 dispersed
Car03g01240 Car-Chr3:9590505 Car02g00402 Car-Chr2:3100912 1.41E-06 dispersed
Car05g00151 Car-Chr5:762656 Car02g00402 Car-Chr2:3100912 8.15E-52 transposed
Car09g01018 Car-Chr9:6823919 Car02g00402 Car-Chr2:3100912 1.03E-51 transposed
Car02g00402 Car-Chr2:3100912 Car03g00980 Car-Chr3:7568044 2.92E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2961 PF00010 HLH 2.40E-07 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00402 - - cmos:111451594 365.155