Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00437 ATGGCCGATGCTGAGGATATCCAGCCACTTGTCTGCGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCTAGGGCAGTGTTTCCCAGCATTGTTGGTCGACCCCGACACACTGGTGTCATGGTAGGTATGGGCCAGAAGGATGCTTATGTCGGTGATGAGGCCCAATCCAAAAGAGGTATTCTCACCTTGAAATATCCCATTGAGCATGGTATTGTGAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCTGTGCTTCTTACTGAAGCACCTCTCAATCCCAAAGCTAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTTAATGTACCTGCTATGTATGTTGCTATCCAGGCCGTTCTATCTCTGTACGCCAGTGGTCGTACAACAGGTATTGTGCTGGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTACGAGGGTTATGCTCTACCCCATGCTATCCTCCGTCTGGACCTTGCTGGTCGTGATCTAACTGATGCCTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACAACCACTGCTGAACGGGAAATTGTCCGTGACATGAAAGAAAAGCTTGCTTATGTTGCACTCGACTATGAGCAGGAACTCGAGACTGCTAAGAGTAGCTCCTCAATTGAGAAGAACTACGAACTGCCTGATGGGCAAGTCATCACAATCGGAGCTGAGAGATTCCGTTGCCCTGAAGTTCTTTTCCAGCCATCTCTCATTGGAATGGAAGCTGCTGGAATCCATGAGACTACCTACAACTCAATCATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGTAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGCATCGCAGACAGAATGAGCAAAGAGATCACAGCTCTTGCCCCAAGCAGCATGAAAATTAAGGTCGTTGCACCTCCTGAAAGGAAATACAGTGTCTGGATTGGAGGGTCAATCCTTGCATCGCTCAGCACCTTCCAGCAGATGTGGATTTCGAAGGGTGAGTATGATGAATCTGGTCCATCCATCGTCCACAGGAAGTGCTTCTAA 1134 46.91 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3455942 3457929 - Carg11682-RA Car02g00437 142923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00437 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Car02g00437 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Car02g00437 377 Gene3D - 10 371 - -
Car02g00437 377 PRINTS Actin signature 28 37 IPR004000 -
Car02g00437 377 PRINTS Actin signature 51 62 IPR004000 -
Car02g00437 377 PRINTS Actin signature 63 85 IPR004000 -
Car02g00437 377 PRINTS Actin signature 117 130 IPR004000 -
Car02g00437 377 PRINTS Actin signature 142 161 IPR004000 -
Car02g00437 377 PRINTS Actin signature 238 254 IPR004000 -
Car02g00437 377 Gene3D - 140 340 - -
Car02g00437 377 PANTHER ACTIN 1 376 IPR004000 -
Car02g00437 377 SMART actin_3 7 377 IPR004000 -
Car02g00437 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Car02g00437 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Car02g00437 377 PANTHER ACTIN 1 376 - -
Car02g00437 377 Pfam Actin 5 377 IPR004000 -
Car02g00437 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Car02g00437 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Car02g00437 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00437 Car-Chr2:3455942 Car07g00770 Car-Chr7:4019537 0 dispersed
Car04g00189 Car-Chr4:1039088 Car02g00437 Car-Chr2:3455942 4.48E-18 dispersed
Car04g01808 Car-Chr4:10500347 Car02g00437 Car-Chr2:3455942 2.27E-71 dispersed
Car06g00595 Car-Chr6:3413670 Car02g00437 Car-Chr2:3455942 2.20E-39 dispersed
Car15g00073 Car-Chr15:458777 Car02g00437 Car-Chr2:3455942 6.23E-65 dispersed
Car15g00074 Car-Chr15:461074 Car02g00437 Car-Chr2:3455942 4.42E-38 dispersed
Car17g00915 Car-Chr17:7527571 Car02g00437 Car-Chr2:3455942 2.98E-64 dispersed
Car18g00679 Car-Chr18:7971451 Car02g00437 Car-Chr2:3455942 5.25E-74 dispersed
Car02g00437 Car-Chr2:3455942 Car20g00933 Car-Chr20:10188237 0 wgd
Car02g00437 Car-Chr2:3455942 Car03g00968 Car-Chr3:7490909 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00437 K10355 - csv:101215469 758.059