Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00488 ATGTTTCATGCCACCAAGAAACCCTCCTCTATGACATCTTCCCATGACAGGCCAATGTGTGTCCAAGGAGATTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGTCTCCGCTGGACAGTCGAGCTCCACGAGCGCTTTGTCGACGCTGTCACTCAGCTCGGAGGACCCGACAAGGCCACTCCCAAGACCATCATGAGGTTTAACGCCCTTTTTCTCTCGGAACGTGTTCAGAAGTTCAGGCTCGGGAAGCAACCGCACAAGGAATTCAACGATCAATCGATAAAGGATGGCATGAGAGCTTCAGCCTTAGAACTTCATAGAAACAGTGGATCTTCTTCCACCTTAATGGACCGTAGCATGAACGAAGAAGGTGGGGTTAAGAGTGAACACTTTATTTTGTGGTTTCTTGTACGACAAATGTTGTCGGATTCTCTAACTAACAAACAGCGTACTGAACAAATAACCTATTTTTCTGCTAGAATGCAATTGGAGGTCCAAAGACGGCTGCATGAACAAATTGAGGTACAAAGACATCTTCAATTGAGGATTGAGGCTCAAGGCAAATACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGCGAAAACATGGCCGCCGCCGCCGCCGCCGCCGCCGGACGTTTCAAAACCACTTCCAACAATATTGGAACAACCACCAATCTTGTTTCAGACGCCGCCAACAAGGCCTTCATTTCACCTCCTCCTCCTCCTCCTCCTCACACCTTCCCTCCTTTTCAAGACATCAACAACCTATTTACCTCGGAACCACCGGCGCAGGCGCCGCCTCTTATCGACTGCCTCAAGAAGCCGAACCCCTTCATCTCCGACACCGGTAAGACCCCCCTTTTCTGGGCCGATGATCTCCGGCTCCAAGACTTAGGAACCCCGTCGGCCACCCTAGCGCCACCGCCGCCACCCATCAATGGCTCAGCTGACTTGGACCCTCAACAGCTGGAAATGTATGAAACTAAGCCACCGCCACTGCTGCTCTCCGTTGGCAACGATGTGATGACGAATGAGAAGAAGTTCGACGTGTCGTTAAAGCTCGAGGGACCGTCACCACGACATTCGTCGGGGCATTCCGATGAGAAGGTGAATAACAATAATAACCCTACAATGTCACAATCACAGGGAAGAAATAATTCTAATTTGGGTTAA 1188 50.84 MFHATKKPSSMTSSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRFNALFLSERVQKFRLGKQPHKEFNDQSIKDGMRASALELHRNSGSSSTLMDRSMNEEGGVKSEHFILWFLVRQMLSDSLTNKQRTEQITYFSARMQLEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAAAAAAAGRFKTTSNNIGTTTNLVSDAANKAFISPPPPPPPHTFPPFQDINNLFTSEPPAQAPPLIDCLKKPNPFISDTGKTPLFWADDLRLQDLGTPSATLAPPPPPINGSADLDPQQLEMYETKPPPLLLSVGNDVMTNEKKFDVSLKLEGPSPRHSSGHSDEKVNNNNNPTMSQSQGRNNSNLG 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3793714 3795982 + Carg11734-RA Car02g00488 142974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00488 395 Pfam MYB-CC type transfactor, LHEQLE motif 161 201 IPR025756 -
Car02g00488 395 MobiDBLite consensus disorder prediction 304 323 - -
Car02g00488 395 MobiDBLite consensus disorder prediction 353 372 - -
Car02g00488 395 MobiDBLite consensus disorder prediction 373 395 - -
Car02g00488 395 MobiDBLite consensus disorder prediction 353 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00488 - - - csv:101203721 524.628
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00488 Car-Chr2:3793714 Car10g01051 Car-Chr10:10841263 4.02E-101 dispersed
Car02g00488 Car-Chr2:3793714 Car20g00251 Car-Chr20:1458214 1.82E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g01696 CST 12 271 G2-like Transcription Factor Family AT3G24120 60.1 1.2e-73 273.9
Car10g01051 . 16 203 G2-like Transcription Factor Family AT3G24120 53.0 9.5e-42 167.9
Car19g00887 . 18 178 G2-like Transcription Factor Family AT3G24120 58.5 8.1e-41 164.9
Car06g01068 CST 12 101 G2-like Transcription Factor Family AT3G24120 87.0 1.1e-40 164.5
Car19g00157 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.1e-37 154.5
Car07g00322 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Car20g00562 . 92 236 G2-like Transcription Factor Family AT5G44190 66.2 6.8e-47 185.3
Car01g00304 . 189 413 G2-like Transcription Factor Family AT5G16560 50.4 2.3e-43 173.7
Car19g00172 . 150 352 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Car12g00477 CCT 4 143 G2-like Transcription Factor Family AT5G42630 58.3 8.2e-38 154.5
Car04g02002 . 40 278 G2-like Transcription Factor Family AT1G25550 52.0 6.6e-45 178.3
Car04g02002 . 40 278 G2-like Transcription Factor Family AT3G25790 51.6 1.5e-38 157.1
Car03g00998 . 1 305 G2-like Transcription Factor Family AT5G05090 54.1 3.8e-74 275.4
Car07g01077 . 1 299 G2-like Transcription Factor Family AT5G05090 54.5 1.2e-72 270.4
Car14g00453 . 1 279 G2-like Transcription Factor Family AT5G05090 58.2 1.1e-70 263.8
Car06g00019 . 1 286 G2-like Transcription Factor Family AT5G05090 52.3 2.4e-68 256.1
Car14g01696 CST 12 315 G2-like Transcription Factor Family AT4G13640 57.3 2.4e-61 233.0
Car14g01696 CST 12 271 G2-like Transcription Factor Family AT3G24120 60.1 1.2e-73 273.9
Car10g01051 . 16 203 G2-like Transcription Factor Family AT3G24120 53.0 9.5e-42 167.9
Car19g00887 . 18 178 G2-like Transcription Factor Family AT3G24120 58.5 8.1e-41 164.9
Car06g01068 CST 12 101 G2-like Transcription Factor Family AT3G24120 87.0 1.1e-40 164.5
Car19g00157 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.1e-37 154.5
Car07g00322 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Car06g01472 . 47 278 G2-like Transcription Factor Family AT1G69580 50.4 2.7e-40 163.3
Car19g00887 . 1 387 G2-like Transcription Factor Family AT1G79430 51.7 3.0e-82 302.8
Car10g01051 . 1 352 G2-like Transcription Factor Family AT1G79430 54.6 2.1e-80 296.6
Car02g00488 . 1 209 G2-like Transcription Factor Family AT1G79430 63.0 1.5e-54 210.7
Car07g00323 . 66 274 G2-like Transcription Factor Family AT2G01060 66.7 8.6e-54 207.6
Car07g01077 . 1 299 G2-like Transcription Factor Family AT3G10760 62.5 2.4e-89 326.2
Car03g00998 . 1 305 G2-like Transcription Factor Family AT3G10760 60.1 1.7e-87 320.1
Car06g00019 . 1 286 G2-like Transcription Factor Family AT3G10760 58.1 3.9e-84 308.9
Car14g00453 . 1 279 G2-like Transcription Factor Family AT3G10760 58.6 7.6e-80 294.7
Car07g01077 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 6.5e-60 228.0
Car14g00453 . 1 195 G2-like Transcription Factor Family AT2G40970 59.9 4.2e-59 225.3
Car03g00998 . 1 204 G2-like Transcription Factor Family AT2G40970 59.0 5.5e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2971 PF14379 Myb_CC_LHEQLE 1.40E-21 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00488 Car_Chr02 FPKM 13.440239 14.801003 17.851833 15.908015 10.941738 10.162398 10.63727 20.717836 23.190886 21.451698