Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00488 ATGTTTCATGCCACCAAGAAACCCTCCTCTATGACATCTTCCCATGACAGGCCAATGTGTGTCCAAGGAGATTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGTCTCCGCTGGACAGTCGAGCTCCACGAGCGCTTTGTCGACGCTGTCACTCAGCTCGGAGGACCCGACAAGGCCACTCCCAAGACCATCATGAGGTTTAACGCCCTTTTTCTCTCGGAACGTGTTCAGAAGTTCAGGCTCGGGAAGCAACCGCACAAGGAATTCAACGATCAATCGATAAAGGATGGCATGAGAGCTTCAGCCTTAGAACTTCATAGAAACAGTGGATCTTCTTCCACCTTAATGGACCGTAGCATGAACGAAGAAGGTGGGGTTAAGAGTGAACACTTTATTTTGTGGTTTCTTGTACGACAAATGTTGTCGGATTCTCTAACTAACAAACAGCGTACTGAACAAATAACCTATTTTTCTGCTAGAATGCAATTGGAGGTCCAAAGACGGCTGCATGAACAAATTGAGGTACAAAGACATCTTCAATTGAGGATTGAGGCTCAAGGCAAATACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGCGAAAACATGGCCGCCGCCGCCGCCGCCGCCGCCGGACGTTTCAAAACCACTTCCAACAATATTGGAACAACCACCAATCTTGTTTCAGACGCCGCCAACAAGGCCTTCATTTCACCTCCTCCTCCTCCTCCTCCTCACACCTTCCCTCCTTTTCAAGACATCAACAACCTATTTACCTCGGAACCACCGGCGCAGGCGCCGCCTCTTATCGACTGCCTCAAGAAGCCGAACCCCTTCATCTCCGACACCGGTAAGACCCCCCTTTTCTGGGCCGATGATCTCCGGCTCCAAGACTTAGGAACCCCGTCGGCCACCCTAGCGCCACCGCCGCCACCCATCAATGGCTCAGCTGACTTGGACCCTCAACAGCTGGAAATGTATGAAACTAAGCCACCGCCACTGCTGCTCTCCGTTGGCAACGATGTGATGACGAATGAGAAGAAGTTCGACGTGTCGTTAAAGCTCGAGGGACCGTCACCACGACATTCGTCGGGGCATTCCGATGAGAAGGTGAATAACAATAATAACCCTACAATGTCACAATCACAGGGAAGAAATAATTCTAATTTGGGTTAA 1188 50.84 MFHATKKPSSMTSSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRFNALFLSERVQKFRLGKQPHKEFNDQSIKDGMRASALELHRNSGSSSTLMDRSMNEEGGVKSEHFILWFLVRQMLSDSLTNKQRTEQITYFSARMQLEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAAAAAAAGRFKTTSNNIGTTTNLVSDAANKAFISPPPPPPPHTFPPFQDINNLFTSEPPAQAPPLIDCLKKPNPFISDTGKTPLFWADDLRLQDLGTPSATLAPPPPPINGSADLDPQQLEMYETKPPPLLLSVGNDVMTNEKKFDVSLKLEGPSPRHSSGHSDEKVNNNNNPTMSQSQGRNNSNLG 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3793714 3795982 + Carg11734-RA Car02g00488 142974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00488 395 Pfam MYB-CC type transfactor, LHEQLE motif 161 201 IPR025756 -
Car02g00488 395 MobiDBLite consensus disorder prediction 304 323 - -
Car02g00488 395 MobiDBLite consensus disorder prediction 353 372 - -
Car02g00488 395 MobiDBLite consensus disorder prediction 373 395 - -
Car02g00488 395 MobiDBLite consensus disorder prediction 353 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00488 Car-Chr2:3793714 Car10g01051 Car-Chr10:10841263 4.02E-101 dispersed
Car02g00488 Car-Chr2:3793714 Car20g00251 Car-Chr20:1458214 1.82E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2971 PF14379 Myb_CC_LHEQLE 1.40E-21 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00488 - - csv:101203721 524.628