Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00516 ATGGGAGCTGGTTCATCGCCATGCGCCTCCTGCAAATTACTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCAACGACCCTTACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGATGCAGTGAACAGTATGGTATATGAAGCAAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGAGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAACTGGCGGCGGCGCAGGCTGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTCCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCGCCGGAAGTTGAAGATTATTGCTCTCTGTGGAGTTGA 480 49.79 MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPASFPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4069449 4069928 + Carg23873-RA Car02g00516 143002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00516 159 Coils Coil 86 113 - -
Car02g00516 159 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Car02g00516 159 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00516 Car20g00287 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00516 Car-Chr2:4069449 Car11g01652 Car-Chr11:12991308 6.16E-53 dispersed
Car11g00069 Car-Chr11:374319 Car02g00516 Car-Chr2:4069449 2.78E-48 dispersed
Car16g00130 Car-Chr16:756156 Car02g00516 Car-Chr2:4069449 1.05E-41 transposed
Car02g00516 Car-Chr2:4069449 Car20g00287 Car-Chr20:1663234 4.81E-67 wgd
Car02g00516 Car-Chr2:4069449 Car04g00127 Car-Chr4:676771 5.69E-66 wgd
Car02g00516 Car-Chr2:4069449 Car04g01025 Car-Chr4:5879567 5.57E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2976 PF03195 LOB 2.50E-40 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00516 - - csv:101207667 234.958