Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car02g00516 | ATGGGAGCTGGTTCATCGCCATGCGCCTCCTGCAAATTACTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCAACGACCCTTACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGATGCAGTGAACAGTATGGTATATGAAGCAAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGAGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAACTGGCGGCGGCGCAGGCTGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTCCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCGCCGGAAGTTGAAGATTATTGCTCTCTGTGGAGTTGA | 480 | 49.79 | MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPASFPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS | 159 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4069449 | 4069928 | + | Carg23873-RA | Car02g00516 | 143002 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car02g00516 | 159 | Coils | Coil | 86 | 113 | - | - | |
Car02g00516 | 159 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
Car02g00516 | 159 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car02g00516 | Car20g00287 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car02g00516 | Car-Chr2:4069449 | Car11g01652 | Car-Chr11:12991308 | 6.16E-53 | dispersed | |
Car11g00069 | Car-Chr11:374319 | Car02g00516 | Car-Chr2:4069449 | 2.78E-48 | dispersed | |
Car16g00130 | Car-Chr16:756156 | Car02g00516 | Car-Chr2:4069449 | 1.05E-41 | transposed | |
Car02g00516 | Car-Chr2:4069449 | Car20g00287 | Car-Chr20:1663234 | 4.81E-67 | wgd | |
Car02g00516 | Car-Chr2:4069449 | Car04g00127 | Car-Chr4:676771 | 5.69E-66 | wgd | |
Car02g00516 | Car-Chr2:4069449 | Car04g01025 | Car-Chr4:5879567 | 5.57E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
2976 | PF03195 | LOB | 2.50E-40 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car02g00516 | - | - | csv:101207667 | 234.958 |