Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00534 ATGGTGTGCAATGGTTGTAATAGCAATTCTGTAAGCCCCAACTTCATGATGGATGGTTGCAATAGAAATCTGGGGTTTTGTATATCGGTTTTGCTCGAATTTTCGGCCACGGATGATCTGATTGGATTTAGGAGTGCTGTTGAGGAAGATGGTCATGATATTGATGAAGCAAGTTTGTGGTATGGGAGAGTTTTTGGTTCCAAAAAGATGGGATATGAAGAACGAACCCCTCTTATGGTTGCAGCCATGTTTGGGAGCTTGAATGTCCTTTCGTATATCGTTCATAGTGGTCGTGTTGATGTTAATCGAGCTTGCGGTTCGGATGGTGCAACCGCTCTCCATTGTGCTGTTGCTGGTGGTTCTGCTGTTGCTGATCAGGTTGTTAAATACTTGCTTGATGCTTTTGCTGATGTGAATGTCGTCGATGCGAATGGCTACCGGCCTGGTGACTTGATTGCTCCTGATTTTACTTTGGCGTCTTTGTATTCGAGGAGGAAGGCGTTACAACAGTTGCTAAAGGGATATGGTAACGACGAGGACGTTCTTGGTTCATCTGAGATGATTTTTTACGAGAGGGAAACACAGGAGGCACGGGAGGTTTTGACGCCTCGTGTTTCGAGAGATGGAACGGAGAAGAAAGAGTATCCAGTTGATCACTCGCTTCCCGACATCAAGAATGGGATTTATAGTACAGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCCCATGATTGGACGGAGTGCCCGTTTGTTCACCCTGGCGAAAACGCAAGAAGGCGGGATCCTAGGAAATATCATTACAGCTGCGTCCCGTGTCCCGAATTTAGAAAGGGCGCATGTAGGCAGGGGGATGCCTGTGAATATGCTCATGGAATCTTTGAATGTTGGCTCCATCCTGCTCAATACCGCACCCGTCTTTGCAAGGACGAAACGGGATGCACCCGAAAGGTCTGTTTCTTTGCTCACAAACCAGAGGAGCTACGCCCCTTGTATGCTTCGACTGGTTCTGCTGTACTGTCCCCAAGATCGATCTCTGGTTCGTCCCTAGACATTCCATCAATCAGCCTGCTTACCCTTGGTTCTCCGTCATCGACTCCGCCGTTGACTCCTGGAGTTTCTTCTCCGCTGGGTGGAACCATGTGGCAGACTCAATGTAATATTGCGCCTCCGACGTTGCAGCTTCCGGGTAGCCGGTTGAAGGCTGCTTTGAGTGCAAGAGACATGGATTTAGATGCCGAGTTACTCGGTCTCGAAAGTCAGCGACGTAGACAGCAACAGTTTATGGACGAGTTATCGTGTCTACCTTCCCCTTCCAGATGGAACAATGGCATACCAACCCCTACATCTTTTCCATCTCCAAGGAGTAGAAATGGAGAATTGAACGGGCTCGGAGGCATGAATCCTACTAACCTCGAGAACATTTACGGATCATCGGTAGATCCCGCACTCTTCCCTCAATTACAAGGACTCTCACTCGATTCCGTGCAATCCCCGCCCGGGATGCGCCAAAGCCTGAACCAGTCATTCCTATCAAACTATGCTAACGGCATTGGATCTCCTCCTGCAAGGTCATCTCAACCATTTGGCCATGACTCATCTGTGTCTGCTGCAGAAAGCCTTCTGAGTTCCAGGGCTGCTGCTTTCACCAAGCGCAGCCACAGCTTTATCGAACGCGGTGTAGTGAACCGTCATTCTGGACATTCACCTCCAGCTACATCTACAACCATCACGCCTTCGAACTTCCCTGATTGGGGTTCGCCCAACGGAAAACTAGACTGGGGAATTCACGGAGAAGAACTCACCAAGTTAAGAAAGTCTGCATCATTCGGGCTACGAAGTAATTCCCTCGCAACACCTGCAATGCACGCTACTTCTTCCAAGCCAGACGTCTCCTGGGTTCAGTCCCTGGTGAACGATGCTCCGACCGAGAACTCCGTGCAGTTGAGCATGGACGAGCAGCAGCTTTGTCATATCGACAATGGGGATTCAAAGCTGTACATGGAACAGAAGCAGCTGGTCGCTTAA 2046 48.83 MVCNGCNSNSVSPNFMMDGCNRNLGFCISVLLEFSATDDLIGFRSAVEEDGHDIDEASLWYGRVFGSKKMGYEERTPLMVAAMFGSLNVLSYIVHSGRVDVNRACGSDGATALHCAVAGGSAVADQVVKYLLDAFADVNVVDANGYRPGDLIAPDFTLASLYSRRKALQQLLKGYGNDEDVLGSSEMIFYERETQEAREVLTPRVSRDGTEKKEYPVDHSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGACRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSISGSSLDIPSISLLTLGSPSSTPPLTPGVSSPLGGTMWQTQCNIAPPTLQLPGSRLKAALSARDMDLDAELLGLESQRRRQQQFMDELSCLPSPSRWNNGIPTPTSFPSPRSRNGELNGLGGMNPTNLENIYGSSVDPALFPQLQGLSLDSVQSPPGMRQSLNQSFLSNYANGIGSPPARSSQPFGHDSSVSAAESLLSSRAAAFTKRSHSFIERGVVNRHSGHSPPATSTTITPSNFPDWGSPNGKLDWGIHGEELTKLRKSASFGLRSNSLATPAMHATSSKPDVSWVQSLVNDAPTENSVQLSMDEQQLCHIDNGDSKLYMEQKQLVA 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4159493 4161538 - Carg23855-RA Car02g00534 143020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00534 681 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 298 IPR000571 GO:0046872
Car02g00534 681 Coils Coil 679 681 - -
Car02g00534 681 ProSiteProfiles Zinc finger C3H1-type profile. 278 300 IPR000571 GO:0046872
Car02g00534 681 ProSiteProfiles Ankyrin repeat profile. 108 143 IPR002110 GO:0005515
Car02g00534 681 MobiDBLite consensus disorder prediction 445 465 - -
Car02g00534 681 ProSiteProfiles Ankyrin repeat region circular profile. 108 142 - -
Car02g00534 681 MobiDBLite consensus disorder prediction 573 590 - -
Car02g00534 681 Pfam Ankyrin repeats (3 copies) 71 142 IPR002110 GO:0005515
Car02g00534 681 MobiDBLite consensus disorder prediction 568 590 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00534 Car20g00300 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00534 Car-Chr2:4159493 Car14g00415 Car-Chr14:2109824 1.74E-160 dispersed
Car02g00534 Car-Chr2:4159493 Car20g00300 Car-Chr20:1736664 0 wgd
Car02g00534 Car-Chr2:4159493 Car04g00144 Car-Chr4:787657 0 wgd
Car02g00534 Car-Chr2:4159493 Car04g01038 Car-Chr4:5949558 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2980 PF12796 Ank_2 2.50E-08 CL0465 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00534 - - csv:101213761 1063.52