Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car02g00576 | CTTCACCTTTTTCGCAGAAAAACAATGGCCGCCATTATTTCTCTCTGCATTGCATCTCTTCTCCCATTTTTCCTTGTGGTCGACGCTAGAATCCCCGGCGTTTACACCGGCGGCGCCTGGCAGAATGCTCATGCCACCTTCTACGGCGGTTCTGACGCTTCCGGCACCATGGGCGGAGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTATGGAGTCAACACGGCGGCGCTAAGTACGGCTCTGTTCAACAATGGGCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGTGCTAATGACCCAAAATGGTGCCATTCCGGCAGCCCCTCGATCTTGGTTACTGCTACCAATTTCTGCCCGCCGAATTATGCTCTTCCCAACGACAATGGCGGCTGGTGTAACCCTCCTCGGAGCCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGTGCCGGAATTGTCCCCGTCGCTTACCGCCGAGTGCCATGCCGGAAGCAGGGAGGAATCAGGTTCACGATCAACGGTTTCCGTTACTTCAACCTGGTTTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGCGGGCTAGCGTTAAAGGATCAAAAACTGAGTGGATGAGCATGACGAGAAACTGGGGGCAAAACTGGCAATCTAACGCCGTGTTGGTGGGCCAGGCTTTGTCGTTTAGAGTGACCGGCAGTGACCGGCGAACCTCAACGTCTTGGAACATCGTGCCCGCCAATTGGCAGTTCGGTCAGACTTTCACCGGAAAAAACTTCCGCGTTTAA | 801 | 54.06 | LHLFRRKTMAAIISLCIASLLPFFLVVDARIPGVYTGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGQSCGACFEIKCANDPKWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRASVKGSKTEWMSMTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV | 266 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 4394601 | 4395593 | + | Carg20297-RA | Car02g00576 | 143062 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car02g00576 | 266 | Pfam | Expansin C-terminal domain | 173 | 250 | IPR007117 | - | |
| Car02g00576 | 266 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 58 | 172 | IPR007112 | - | |
| Car02g00576 | 266 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 182 | 261 | IPR007117 | - | |
| Car02g00576 | 266 | Pfam | Lytic transglycolase | 75 | 162 | IPR009009 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car01g00552 | Car02g00576 | CCT | |
| Car02g00576 | Car13g00092 | CCT | |
| Car01g00552 | Car02g00576 | ECH | |
| Car02g00576 | Car13g00092 | ECH | |
| Car02g00576 | Car20g00342 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g00576 | Car-Chr2:4394601 | Car04g01707 | Car-Chr4:9792612 | 6.16E-128 | dispersed | |
| Car03g01078 | Car-Chr3:8772489 | Car02g00576 | Car-Chr2:4394601 | 2.62E-94 | transposed | |
| Car01g00552 | Car-Chr1:3258039 | Car02g00576 | Car-Chr2:4394601 | 7.16E-170 | wgd | |
| Car13g00092 | Car-Chr13:680431 | Car02g00576 | Car-Chr2:4394601 | 7.06E-168 | wgd | |
| Car02g00576 | Car-Chr2:4394601 | Car20g00342 | Car-Chr20:1954549 | 1.43E-180 | wgd | |
| Car02g00576 | Car-Chr2:4394601 | Car03g00371 | Car-Chr3:4536607 | 1.79E-169 | wgd | |
| Car02g00576 | Car-Chr2:4394601 | Car04g00193 | Car-Chr4:1056885 | 7.76E-174 | wgd | |
| Car02g00576 | Car-Chr2:4394601 | Car04g01084 | Car-Chr4:6245571 | 2.78E-141 | wgd | |
| Car02g00576 | Car-Chr2:4394601 | Car04g02553 | Car-Chr4:20180730 | 1.29E-138 | wgd | |
| Car02g00576 | Car-Chr2:4394601 | Car07g00978 | Car-Chr7:5558020 | 1.32E-166 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car02g00576 | - | - | csv:101203979 | 506.138 |