Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00587 ATGGCTCATTCTTCTCTTCCAATCTTCGTCGATCCGCCGAATTGGCCACCGTCAAATCAACCACAAGGAAATGATCAGCATCAACTTCCGGCGTTCATGCTACCACCTCAGCCTACCGCGGCTCGTGGCAGCGGAGCCCGACCGGGTTCTATGGCGTACCGAGCGAGATTGGCGATGGTGCCACAGCCGGAGATGGCACTAAAATGCCCACGTTGTGATTCTACAAACACCAAATTCTGTTATTTCAATAATTACAGCCTTACTCAGCCGAGACACTTTTGTAAAACCTGCCGGCGGTACTGGACGCGCGGCGGCGCTCTTAGAAATGTGCCGGTCGGTGGAGGGTTTCGTAAGAACAAGAAGAAGAAGAAATCTAACCGATCTAAGTCTCCAATTGCTACTCAAATTGAAATGGGAAATTCAAGAACAATTGAGAGCCATTTCCCATCACAATCTTTTCAATTACCTTCAATTCCATCTCTCTCTCGCTTTGGAGCAAACAACTCAGCCCTAAACTACGCCGGAATTCACATCGGAAACACAAATTCCGGCAGGCAATCGGAGCAATGGCAGCGTTCTCAGCAACAACTGCCGTTCATCATTGCCGGACTCGAACCACCGACTCCCGCCGCTGCTTACCCACAAAACCTTCAAACCGAAGTCGACAACTTCGGTTGCCACCAACAAATTCAGAATTCGACACCCTTTTTTAGGATTCCGATGAAAAACAAAGAACAAGAACAAGAACAAGGAATTTTATCGAACTTCCTACGACCAGCGGACCAAAACAGCCACTTTTGGGGATGTGATCATCAAAATTCATGGACGGATTTATCAGCTATCAGTTCATCTTCAAGCAGCCATCTTTTGTAA 873 47.54 MAHSSLPIFVDPPNWPPSNQPQGNDQHQLPAFMLPPQPTAARGSGARPGSMAYRARLAMVPQPEMALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRKNKKKKKSNRSKSPIATQIEMGNSRTIESHFPSQSFQLPSIPSLSRFGANNSALNYAGIHIGNTNSGRQSEQWQRSQQQLPFIIAGLEPPTPAAAYPQNLQTEVDNFGCHQQIQNSTPFFRIPMKNKEQEQEQGILSNFLRPADQNSHFWGCDHQNSWTDLSAISSSSSSHLL 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4460372 4461476 - Carg20286-RA Car02g00587 143073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00587 290 MobiDBLite consensus disorder prediction 112 131 - -
Car02g00587 290 MobiDBLite consensus disorder prediction 11 48 - -
Car02g00587 290 Pfam Dof domain, zinc finger 66 121 IPR003851 GO:0003677|GO:0006355
Car02g00587 290 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
Car02g00587 290 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00540 Car02g00587 CCT
Car02g00587 Car13g00103 CCT
Car01g00540 Car02g00587 ECH
Car02g00587 Car13g00103 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00540 Car-Chr1:3203824 Car02g00587 Car-Chr2:4460372 1.81E-49 wgd
Car13g00103 Car-Chr13:742863 Car02g00587 Car-Chr2:4460372 2.27E-48 wgd
Car14g00128 Car-Chr14:617199 Car02g00587 Car-Chr2:4460372 1.68E-44 wgd
Car15g00373 Car-Chr15:1950676 Car02g00587 Car-Chr2:4460372 4.14E-49 wgd
Car02g00587 Car-Chr2:4460372 Car20g00359 Car-Chr20:2020738 2.05E-108 wgd
Car02g00587 Car-Chr2:4460372 Car03g00379 Car-Chr3:4584565 2.87E-45 wgd
Car02g00587 Car-Chr2:4460372 Car04g00201 Car-Chr4:1109912 4.51E-48 wgd
Car02g00587 Car-Chr2:4460372 Car04g01092 Car-Chr4:6300012 4.89E-48 wgd
Car02g00587 Car-Chr2:4460372 Car04g02541 Car-Chr4:20112631 9.39E-49 wgd
Car02g00587 Car-Chr2:4460372 Car06g00263 Car-Chr6:1493595 5.28E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2985 PF02701 zf-Dof 1.30E-32 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00587 - - cpep:111794468 554.288