Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00618 ATGGAGCCGTTGGAAAAACCGGTGCCGAAGTCGTCGCCTCTCGCGCCATTTCCTCGGGACTCGAGAGGATCGCTCGAGGTTTTTAATCCCTCCGCCACTTATACGTCGCGATCCATCAATTCCATTTCACGGCCGAACTCGACCTGGTCCAATTGGGTGGAGCCACGTAGCAGTGCGGAGTCGGACTCCACTAGACTCGCCGCCGTTCCGACCAGTAAGACCGGCGAGGATATCACGTCGTGGATGGCCTTCAAGGATTCGAATGCTTCACCACAATCCAACTCGCCACAAGCTCAGAAGACTATCTCGGCGATTCTCAGCGACAAATCGCCGCCGAAATCAGCGGGCGAAGTAGACTCTGCCACCTTACGTGCTGCCGAGTGGGGATTGGTACTGAAAACCGATACGGAAACTGGAAAACCGCAGGGCGTTGGAGTTCGAACTTCCGGCGGCGATGAACCGATTAACAAACTGGAGAATTCGAGAAGAACTTCGAATAACTCGGGGCGGAGTTCGGGCGACATGTCGGACGATGTGGGAAGAGAAAGAGGGTTTCCGAGAGTCTCTGAGGATTTGAAAGACGCTCTGTCGACATTTCAGCAAACATTTGTGGTTTCTGATGCTACGAAACCTGATTATCCGATTATGTACGCCAGTGCTGGATTCTTCAAGATGACTGGCTATACATCCAAGGAAGTTATCGGAAGAAATTGTCGATTTTTGCAGGGTGCAGATACAGACCCAGAAGATGTGGCCAAGATTCGAGAGGCTTTACAAGCTGGGACAAGTTACTGTGGGAGGTTGTTGAATTACAAGAAAGATGGGACCCCGTTTTGGAATTTGCTTACTATTTCACCTATCAAAGATGATGACGGCAAGGTTCTCAAATTCATTGGAATGCAAGTAGAGGTGAGCAAACACACAGAGGGATTCAAAGATAAGATGGTTCGTCCTAATGGCTTGCCAGAATCGTTGATTCGTTATGATGCCCGTCAAAAGGATATGGCTACCAGTTCGGTAACGGAGCTTGTGCAGGCGGTGAAAATGCCTGGGTCTGTGTCTGTAAGTGAATCTAGGCCACGGGCTCTAAGTGAATCTATGAACCGCCGGTCAGTAAGAAAATCCGGCGGCGGTGGCGGCGGAGGCGACGGCGGAGATGAGACATATAGACTTGAAGCTGCTATGGTTAGGCGAAAGTCAGAGAGTGCAGCAGCTTCAACTGGACGACGTAGAAGGTCGATGGAGCGTATCAATGAGCTGCCGGAGACGAAACCCAAAATGTATAGCCGTCGTTCATTTATAGGGTTTGTGAGGAAAAGTCAATCAAATTCTGAAAGCTTCAACATTGAAAATTGTTCGGAGGATGATAACGAGAGCGATGATGATGATGAGAGACCAGATAGTGTAGACGACAAAGTAAGACAAAAGGAAATGAGGAAGGGTATTGATTTAGCGACCACCCTCGAACGTATAGAGAAAAACTTCGTCATCACTGATCCGAGACTCCCCGACAATCCCATTATATTTGCTTCTGATAGCTTCCTGGAGCTGACTGAGTACAGTAGAGAGGAAATCTTGGGAAGAAATTGCAGGTTCCTGCAAGGTCCTGAAACCGATCGAGCAACTGTCAAGAAAATAAGAGATGCAATTGACAACCAAACTGAAGTTACAGTGCAGCTTATTAACTACACCAAAACTGGTAAGAAGTTTTGGAATCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGGGAAGTCCAGTATTTTATTGGAGTACAACTTGACGGGAGTCAGCACGTCGAACCGCTAAGCAATTGCATATCGGAAACTACTGCAAAAGAGGGCGAAAAATTGGTAAAAGAAACTGCTGAAAATATTGATACGGCGGCTAGAGAACTTCCCGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCTAAAGTGGTCAAACCAAAACCTCACAGAAAGGATAGTGCTTCTTGGAAAGCTTTCCAGAAGATTTTAGACAGTGGAGAACAGATAGGACTGAAACATTTCAAGCCGGTTAAACCTTTGGGATCAGGTGATACTGGCAGTGTGCATTTAGTAGAACTGTGTGGGACTGATCAGTATTTTGCCATGAAGGCAATGGACAAGGGTGTTATGCTTAACCGCAACAAGGTGCATAGAGCTTGCGCCGAGAGGGAAATACTCGACAAGTTGGATCATCCTTTTCTTCCTGCGTTATATGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGAGAGACAACCTAGAAAGGTTTTAAAGGAAGATGCTATAAGGTTTTATGCTGCTGAAGTTCTCATTGCATTAGAGTATCTTCATTGTCAAGGGATAATTTACAGAGATCTGAAGCCTGAGAATGTTCTACTCCGGGGAGACGGACACGTGACGTTGACGGATTTTGACTTGTCATGTTTGACTGCTTCCAAACCTCAGCTTTTGTTTCCAACGACGAATGAGAAGAAAAAACGCTCAAGATCTCAACAGACTCCGATCTTTATAGCTGAACCTATGCGAGCATCGAACTCATTCGTCGGCACTGAAGAGTACATAGCACCGGAAATCATCACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTGTCCTCCTATATGAGATGCTCTATGGATACACACCCTTTAGGGGGAAGACGAGGCAAAAGACTTTTGCCAACGTTCTTCATAAGGATCTTAAATTTCCCAAAAGTATATCGGCAAGTCTCAATGCAAAGCAATTAATCTTCAGGTTATTGCAAAGAGATCCCAAAACTCGATTGGGTTCTCAACAAGGAGCTAATGAAATCAAACGACATCCGTTCTTCCGAGGCATCAATTGGGCGCTCGTTCGTTGCATGAAACCTCCCGAGCTCGAAGCGCCTCTCTTCCCGACCACCGATGCCGAAAAAGAAGGTAATAAGGCATCAGATTTTGATGGAAAAGATGTTGAACTCTGTGTTTTCTGA 3045 46.34 MEPLEKPVPKSSPLAPFPRDSRGSLEVFNPSATYTSRSINSISRPNSTWSNWVEPRSSAESDSTRLAAVPTSKTGEDITSWMAFKDSNASPQSNSPQAQKTISAILSDKSPPKSAGEVDSATLRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPINKLENSRRTSNNSGRSSGDMSDDVGRERGFPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKDMATSSVTELVQAVKMPGSVSVSESRPRALSESMNRRSVRKSGGGGGGGDGGDETYRLEAAMVRRKSESAAASTGRRRRSMERINELPETKPKMYSRRSFIGFVRKSQSNSESFNIENCSEDDNESDDDDERPDSVDDKVRQKEMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCISETTAKEGEKLVKETAENIDTAARELPDANLTPEDLWANHSKVVKPKPHRKDSASWKAFQKILDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLERQPRKVLKEDAIRFYAAEVLIALEYLHCQGIIYRDLKPENVLLRGDGHVTLTDFDLSCLTASKPQLLFPTTNEKKKRSRSQQTPIFIAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGVLLYEMLYGYTPFRGKTRQKTFANVLHKDLKFPKSISASLNAKQLIFRLLQRDPKTRLGSQQGANEIKRHPFFRGINWALVRCMKPPELEAPLFPTTDAEKEGNKASDFDGKDVELCVF 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4649249 4659232 - Carg20254-RA Car02g00618 143104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00618 1014 ProSiteProfiles PAS repeat profile. 484 553 IPR000014 -
Car02g00618 1014 ProSiteProfiles PAS repeat profile. 188 259 IPR000014 -
Car02g00618 1014 MobiDBLite consensus disorder prediction 351 424 - -
Car02g00618 1014 MobiDBLite consensus disorder prediction 160 174 - -
Car02g00618 1014 MobiDBLite consensus disorder prediction 26 108 - -
Car02g00618 1014 MobiDBLite consensus disorder prediction 451 466 - -
Car02g00618 1014 ProSiteProfiles PAC domain profile. 554 608 IPR000700 -
Car02g00618 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Car02g00618 1014 ProSiteProfiles Protein kinase domain profile. 681 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g00618 1014 MobiDBLite consensus disorder prediction 390 424 - -
Car02g00618 1014 ProSiteProfiles PAC domain profile. 262 316 IPR000700 -
Car02g00618 1014 MobiDBLite consensus disorder prediction 445 476 - -
Car02g00618 1014 Pfam Protein kinase domain 683 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g00618 1014 MobiDBLite consensus disorder prediction 1 119 - -
Car02g00618 1014 MobiDBLite consensus disorder prediction 133 183 - -
Car02g00618 1014 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Car02g00618 1014 Pfam PAS domain 503 595 IPR000014 -
Car02g00618 1014 Pfam PAS domain 209 305 IPR000014 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00618 Car20g00392 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00191 Car-Chr2:1138326 Car02g00618 Car-Chr2:4649249 1.76E-29 dispersed
Car02g00618 Car-Chr2:4649249 Car19g00644 Car-Chr19:7764953 2.03E-17 dispersed
Car12g00845 Car-Chr12:8218223 Car02g00618 Car-Chr2:4649249 1.67E-15 dispersed
Car20g00592 Car-Chr20:3316494 Car02g00618 Car-Chr2:4649249 4.86E-29 dispersed
Car02g00618 Car-Chr2:4649249 Car20g00392 Car-Chr20:2179721 1.39E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88654 PF00069 Pkinase 1.10E-63 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00618 K20715 - csv:101214662 1720.29