Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00621 ATGTTTGATCTTAATCTCAATGTCGACTCGGTTGATGCGACTCAGAAGGAGGACTCCGTCGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCATGTGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGTAATGGCGGCGATGACGACTCGTGCTCCACACGCGCTGGTGGCGAGCTCTTCACGCTCAACTTCGAAATATTGAAGGCTGGAAGCACGAACGATATGGTCACTAAGGAATTTTTTCCGTTAGGTGGAGCGGTGAGTGCTGAATTCGGGATTCCTCAGGGGCATAAATCGGCCTCTTCTTCGTCATCTTCATCGAGGAAGAACTGGATCGACCTTGCGTGCAATCGAAGCAGTTCAGCAGGGGAGGGGAGAACGGTTCAACCAGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGAGGTCCAAGGTCTCGGAGTTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACGGCACACTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGGGGGGTAGACGCTGATATTAATTTCAATGTCAGCGATTATGAGGAAGACCTGAAACTGATGGAGAACTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGTTTCTCAAGGGGGAGCTCAAAATATAGAGGCGTAACATTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTGTTCGACAGCGAGGTCGAAGCTGCAAGGGCTTATGACAAGGCCGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCACATACGAAGGAGAGGGAGTTTCTGAGGGCAGCAGTGAAGGTGGTCGGAGTATGCTTGATTTAAATTTAGGGATTTCACCCCCCTCCAACTGTCAAAAGGATGATAATGGGCATCTGCGATTCCAATCTGGTCCTTGCTTTCCTAATGATCGGAGCACAATGATGGAGAGCAATGCTCGTGCAGCAGTTGGCGATCCACCTGTGAATGGATTGGTAATGACATCAGAGCATGCTCCCTTATGGAACGGTACACAATCTAGCTTCTTCCCCAGTGAGGAAAGCATGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTCCCTAACTGGGCATGGCAAATCCATGGCCCGATTAATGCCGCCCAAATGCCACTGTTCTCTACTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATGCCTCCGCCTCACCAACCGAGCTCAATCGCCCAAAATATCCATTTCAATTCTCCCAAAGCCTCCCTCAACTCCGCCCAGTATCACCACCTGTTGAACCAACAACATGCACCGCCATAA 1479 50.17 MFDLNLNVDSVDATQKEDSVVFFEKLPQGSGNHVDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTLNFEILKAGSTNDMVTKEFFPLGGAVSAEFGIPQGHKSASSSSSSSRKNWIDLACNRSSSAGEGRTVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNVSDYEEDLKLMENLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEGVSEGSSEGGRSMLDLNLGISPPSNCQKDDNGHLRFQSGPCFPNDRSTMMESNARAAVGDPPVNGLVMTSEHAPLWNGTQSSFFPSEESMTEKRLALGSSQGVPNWAWQIHGPINAAQMPLFSTAASSGFSFSATHFPAAMPPPHQPSSIAQNIHFNSPKASLNSAQYHHLLNQQHAPP 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4684407 4687697 - Carg20251-RA Car02g00621 143107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00621 492 MobiDBLite consensus disorder prediction 32 58 - -
Car02g00621 492 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Car02g00621 492 MobiDBLite consensus disorder prediction 128 142 - -
Car02g00621 492 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Car02g00621 492 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700|GO:0006355
Car02g00621 492 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
Car02g00621 492 SUPERFAMILY DNA-binding domain 156 215 IPR016177 GO:0003677
Car02g00621 492 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Car02g00621 492 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Car02g00621 492 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 460 - -
Car02g00621 492 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Car02g00621 492 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 460 - -
Car02g00621 492 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Car02g00621 492 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Car02g00621 492 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Car02g00621 492 MobiDBLite consensus disorder prediction 128 158 - -
Car02g00621 492 MobiDBLite consensus disorder prediction 27 59 - -
Car02g00621 492 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Car02g00621 492 Pfam AP2 domain 248 298 IPR001471 GO:0003700|GO:0006355
Car02g00621 492 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00621 Car-Chr2:4684407 Car14g00972 Car-Chr14:6919663 1.80E-101 dispersed
Car04g00246 Car-Chr4:1393292 Car02g00621 Car-Chr2:4684407 4.49E-08 dispersed
Car14g00161 Car-Chr14:752508 Car02g00621 Car-Chr2:4684407 9.99E-127 wgd
Car02g00621 Car-Chr2:4684407 Car04g00244 Car-Chr4:1361453 2.49E-30 wgd
Car02g00621 Car-Chr2:4684407 Car06g00295 Car-Chr6:1651111 1.71E-82 wgd
Car02g00621 Car-Chr2:4684407 Car07g00921 Car-Chr7:5119172 4.45E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2989 PF00847 AP2 3.10E-09 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00621 K09284 - csv:101222024 812.757