Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00643 ATGAAAGAAGCGGATAAGAACTTGGATCCTCAACTATGGCATGCCTGTGCGGGAGGCATGGTCCAGATGCCTGCTATTAACTCCAAGGTCTTTTACTTCCCTCAGGGTCATGCCGAGCACGCTCAGGCCGCCGTCGATTTCACTTCTTCACTTAGAATCCCGCCGCTTATTCCATGTAGAGTGCTCGCCGTCAAGTTCTTGGCTGATCATGAAACGGATGAAGTTTATGCGAATGTACGACTGATTCCACTGGCGAATAACGAAATTAATTGCGAGGAAGAGGGTGGTTTTGGGAGTAATGGGTCAGAGAATAACATGGAGAAACCGGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCTAACAACGGCGGTGGGTTCTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGAGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCTAAGGATGTCCACGGCGAGGTTTGGAAGTTTCGGCATATTTACAGGGGGACGCCTCGTCGGCATTTATTAACTACTGGGTGGAGTAGTTTTGTCAATCAGAAGAAGCTTGTCGCCGGCGATTCGATTGTTTTTCTGAGATCCAAAAATGGCGACCTCTGTGTTGGAATCCGGCGAGCCAAACGGGCAATTGGGTGTGCTGCTGATCACCCATATGGCTGGAATCCCGGCGGTGGAAATAGCATCCCACCCTACGGTGGGTTGACGATGTTTCTGAGAGATGAGGACAACAAGTTGAGTAGAAAAGGGTCTTTGAGTTCTAATGGTGGTGGGAATTTGAGGGGAAAAGGCAAAGTTAGGCCAGAATCAGTGATTGAAGCGGCGGCGCTGGCAGCGAGTGGGCAGGCGTTTGAGGTGGTTTATTACCCACGCGCCAGCACGCCGGAGTTCTGTGTTAAGGCCTCATCGGTTCGAGCCGCCATGAGAATCCAGTGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAAACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCCTCTGTTCAAGTTGCTGATCCTATCCGCTGGCCCAATTCTCCATGGCGGCTTCTTCAGAGCCATTCACCTGTGCCAGCGAAGACGCTGGCCCCCAATGGGGTGGATTGTAAGATCCTACATTGGTTGGAGAGGGTGACATGGGACGAGCCAGATTTGCTACAGAACGTGAAGCGTGTTAGCCCATGGTTGGTCGAACTGGTATCGAACATGCCCGTCATTCAACTATCACCATTCTCTCCACCAAGAAAGAAGTTTCGACTACCTCAACACCCCGACTTTCCCCTCGACAGCCAATTCCAATTGTCGTCGTTTCCAAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTCCTCAGATTTCCATCTCAACAGCAAACTGCAACTTGGGCTGCTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCCAGAATTTCCCATAGATCGGTTACAGACCACAGAGGCAGCGGCAGTCAGAACTCGTCGGCACTGCTCAATGCAGAGAACACTGGTCCGAAGTTGGAACGATCCGATTCTGTGAAGAAGTATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACACGCAGCTCTTCCGGTGACGTTCACTCACCTCGGACCGAGAAAAGTTCCTTAGACGTGAATTTGGAAAGAGTGAAATTCCTATCTGATGGCTCAGGATACACTTTCAAGCAGCAGCAGATATCTCCAAACAAGTCACCGGGAGCTGGATTTCCATGGTACCAGGGTTATCAAGCCACTGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTCATGGAGTCAGAAGATGTTGGCCGAACGCTTAACCTTTCGGTCATTGGCTCATATGAAGAACTATACCGGAGGCTGGCAAACATGTTCGGAATGGAGAAACCAGACATTCTTAGCCATGTCCTTTACCAAGATGCAACAGGTGCTGTCAAACAAGCTGGAGACAAACCATTCAGTGATTTTATCAAAACAGCTAGAAGACTGACAATTCTAACTGACTCGGGGTCGGACAAGATGGTCGGAAGGAGATTGATGGATGGACTGCGAAGTGGTGAAAATGGATTAGATTCCTCAAACAAGACGGGCCCCTTGAGCATATTTGCATAG 2226 49.37 MKEADKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQAAVDFTSSLRIPPLIPCRVLAVKFLADHETDEVYANVRLIPLANNEINCEEEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGGNSIPPYGGLTMFLRDEDNKLSRKGSLSSNGGGNLRGKGKVRPESVIEAAALAASGQAFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQSHSPVPAKTLAPNGVDCKILHWLERVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDSQFQLSSFPSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISSSDFHLNSKLQLGLLPSSFQQLDFHSRISHRSVTDHRGSGSQNSSALLNAENTGPKLERSDSVKKYQFLLFGQPILTEQQITRSSSGDVHSPRTEKSSLDVNLERVKFLSDGSGYTFKQQQISPNKSPGAGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKMVGRRLMDGLRSGENGLDSSNKTGPLSIFA 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4856852 4861025 - Carg08580-RA Car02g00643 143129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00643 741 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Car02g00643 741 MobiDBLite consensus disorder prediction 511 540 - -
Car02g00643 741 MobiDBLite consensus disorder prediction 516 532 - -
Car02g00643 741 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car02g00643 741 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Car02g00643 741 ProSiteProfiles PB1 domain profile. 628 708 IPR000270 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00643 Car20g00432 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00643 Car-Chr2:4856852 Car05g00429 Car-Chr5:2460737 1.86E-97 dispersed
Car15g00425 Car-Chr15:2215835 Car02g00643 Car-Chr2:4856852 2.10E-77 wgd
Car02g00643 Car-Chr2:4856852 Car20g00432 Car-Chr20:2434138 9.47E-150 wgd
Car02g00643 Car-Chr2:4856852 Car04g02484 Car-Chr4:19754210 0 wgd
Car02g00643 Car-Chr2:4856852 Car07g00909 Car-Chr7:5025676 7.19E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2993 PF02362 B3 7.50E-22 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00643 - - bhj:120088819 1305.81