Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00663 ATGCTCGATTCTTTCTACTACCTCGCCGGCTCCCCCGGCCCCTCCGGCTTCGGCTCCAAATCCACCGCCGAACAAGTCACCGCCTCCTCTCCTCTCCCCCTCCCTTCCCTCACCGCCATCATAACCGGCGCCACGTCTGGTATTGGAGCTGAGACGGCTCGGGTTCTAGCCAAACGTGGGGTTCGTCTCATCCTCCCCTCCCGGAACCTGAAAGCCGCCGAGGAAACCAAGGCGCGGATCCTCTCCGAATGCTCCGATTCCCAAATCATCGTTATGCCACTTGATTTGAGCTCTCTTTCTTCCGTTACAAACTTTGTTCATCAATTTCAATCTCTCAACCTTCCTCTAAACCTCCTCATAAATAACGCTGGCAAATTCTCGCATGACCACGCAATTTCCGAGGACGGGATCGAAATGACCTTCGCCACTAATTATTTGGGTCATTTTCTGTTGACGAAACTGTTGGTGAATACGATGGCGGACACGGCGAAAGCGACGGGGGTTGAAGGGCGGATAGTGAACGTGTCGTCGAGTATTCACGGGTGGTTTTCCGGCGACATGATTAAATATCTGGGCCAGATAAGCCGGAACAAAAGGAACTACGATGCCACACGTGCGTACGCGCTCTCCAAGCTTGCCAACGTTCTTCACACGCACGAACTCGCTCGCAGATTGAAGCAAATGGAAGCTAATGTTAGTGTGAACTGCGTTCATCCCGGAATTGTAAGAACTCGACTCACCAGAGATCGTGAAGGTTTCATAACTGATTTGGTGTTCTTTATGGCTTCCAAGCTGTTGAAGACAATCCCTCAGGCGGCGGCAACGACATGCTACGTGGCGACGAGCCCGAGGTTAAGCCACGTCACCGGGAAGTATTTTTCAGACTGCAACGAAGCCTCGCCGTCGAAGCTCGCCGCTAGCCCAACGGCAGCCGCCCGTCTCTGGTCCGCCTCCGAGATTATGGTCAACACTAAGTCAAAGCTGGTTTTCGATCCAAACAACGGGTTGGAGTAA 1014 53.16 MLDSFYYLAGSPGPSGFGSKSTAEQVTASSPLPLPSLTAIITGATSGIGAETARVLAKRGVRLILPSRNLKAAEETKARILSECSDSQIIVMPLDLSSLSSVTNFVHQFQSLNLPLNLLINNAGKFSHDHAISEDGIEMTFATNYLGHFLLTKLLVNTMADTAKATGVEGRIVNVSSSIHGWFSGDMIKYLGQISRNKRNYDATRAYALSKLANVLHTHELARRLKQMEANVSVNCVHPGIVRTRLTRDREGFITDLVFFMASKLLKTIPQAAATTCYVATSPRLSHVTGKYFSDCNEASPSKLAASPTAAARLWSASEIMVNTKSKLVFDPNNGLE 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4965830 4967795 + Carg08560-RA Car02g00663 143149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00663 337 Pfam short chain dehydrogenase 38 178 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00663 - - - csv:101209698 559.681
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00663 Car16g01152 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00697 Car-Chr1:4165118 Car02g00663 Car-Chr2:4965830 3.22E-28 dispersed
Car02g00663 Car-Chr2:4965830 Car16g01152 Car-Chr16:9820200 3.45E-150 dispersed
Car06g00526 Car-Chr6:2964328 Car02g00663 Car-Chr2:4965830 2.20E-14 dispersed
Car06g00527 Car-Chr6:2965323 Car02g00663 Car-Chr2:4965830 3.64E-39 dispersed
Car15g01154 Car-Chr15:9074619 Car02g00663 Car-Chr2:4965830 5.51E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g203 . . . Bda08g00756 . Bpe07g00255 . . . Cmo16g01268 Cma02g00912 . Car02g00663 . . Cpe14g01011 . . . . . . . . Cla07g00789 Cam07g0852 Cec07g0905 Cco07g0887 Clacu07g0827 Cmu07g0830 Cre07g1188 . . . . Lsi07g01120 . . Cme07g01644 . . . . . . . Bma12g00444 . Cmo02g00919 . . Cma16g01224 . Car16g01152 Cpe08g00909 . . . . . . . . . . . . . . . . . Chy07g01228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002525 1 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 1 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00663 Car_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0