Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00666 ATGAGGCTGTTGAAAGTAGCAACGTGTAATTTGAATCAATGGGCCATGGATTTTGATTGTAATGTGAAGAACATCAAAGAGTCTATTGACGAGGCTAAACGTGCTGGCGCTGTCATCCGACTTGGCCCTGAACTCGAGATTACTGGATATGGCTGTGAAGACCATTTCTTGGAGCTCGACACTGTCATGCATGCATGGGAATGCTTGAAGGATATACTTTCGGGTCCTTTGACTGATGGGATATTGTGCAGCATTGGCATGCCTGTTATTAAGGACTCTGAGCGTTACAATTGTCAAGTGCTCTGTTTCAATAGGAAAATTATTATGATACGTCCAAAAATGTGGCTTGCAAATGATGGGAATTACAGGGAGCTACGGTGGTTCACAGCATGGAAGCTAAAGGACAAGCTTGTGGATTTTCAGCTGCCTAGAGATATCTCTGAGGCTCTGTCACAAACATCTGTGCCTTTTGGCTATGGATATATTCAGTTTCTAGACACAACTGTTGCTGCTGAAGTTTGTGAAGAACTTTTTACACCTATTCCACCGCATGCTGAACTTGCTTTGAATGGGGTTGAAGTATTTATGAATGCTAGTGGAAGTCATCACCAACTAAGAAAACTTGATGTTCGTCTTCGTGCTTTTATAGATGCTACTCATACTCGTGGTGGAGTTTACATGTACAGTAATCACCAGGGTTGTGACGGTGGCCGTCTTTATTATGATGGTTGTGCTTGTGTTGTTATGAACGGCGAGCTTGTAGCTCAAGGGTCGCAGTTTTCCCTGAAGGATGTCGAGGTTGTGGTTGCCAGTGTAGATCTTGATGCGGGGTGCTTTATTGGTGTGGTAGATGTCTGGGATACCCTCCAAAGTTCTCGGTTCAAACCCCAAGTTGCTAGTCTTAGAGGATCTATAAGCAGCTTTCAAGAACAAGCAAGCTATAAGACGACCGTTCCTTCTGTGGCAGCCCCATATAGTCTATGTCAGCCATTCAATCTCAAAATTTCTCTTTCGAGTCCCCTTGAGATTAACTATCACTGCGCGGAAGAGGAAATAGCCTATGGACCTGGTTGCTGGTTGTGGGACTATTTAAGACGAAGCGGAGCTTCTGGATTTTTGCTTCCTCTTTCTGGTGGAGCTGATAGTTCATCTGTTGCAGCCATAGTGGGCTGCATGTGCCAGCTTGTCGTAAAAGATATTGCGAAGGGAGACGAACAAGTTAAAGCTGATGCAATACGGATTGGACGTTATGCTGATGGAGAGTTCCCGACTGATAGTAAAGAATTCGCCAAACGAATTTTTTATACTGTATTTATGGGTTCTGAAAATAGTTCTGAAGCAACACGTACACGAGCAAAGGTTCTAGCAGACGAGATTGGTTCGTGGCATCTTAATGTTTCCATAGACGGGATTGTTTCTGCACTTTTATCTTTGTTCCAAACAGTTACTGGAAAACGTCCACGGTATAAGTTAGATGGGGGATCTAACGTCGAAAATTTAGGCCTGCAGAATATTCAAGCTCGAATCAGGATGGTTCTGGCTTTTATGTTTGCATCGCTCTTACCTTGGGTACATGGTAAATCTGGATTCTACCTTGTTCTGGGTAGCTCCAACGTCGACGAAGGATTGCGTGGTTACTTGACGAAGTACGATTGCAGTTCGGCAGATCTAAATCCAATTGGAAGCATCAGTAAGCAGGATCTTCGAGCTTTTCTTAGATGGGCTGCCACGCATCTTGGCTTCTCATCGTTGGCAGATATCGAAGCAGCTCCTCCCACAGCCGAGCTGGAGCCAATTCGTTCCAACTACAGCCAGTTGGATGAAGTTGACATGGGAATGACATATGAGGAGCTCTCAGTCTACGGAAGGCTGCGAAAAATTTTCCGTTGCGGTCCCGTGTCGATGTTCAAGAATCTCTGCTACCGTTGGGGTTCTAAGTTAACTCCGTCAGAGGTGGCTGAAAAAGTGAAACATTTCTTCAAGTACTACTCAATGAATCGACACAAAATGGTCGTTCTAACGCCATCTTATCACGCTGAGAGTTATTCCCCGGATGACAATCGGTACGATCTTCGGCAATTTCTGTACAACTCAAGGTGGCCATATCAGTTTCGAAAGATGGATAATCTTGTGAAGGAGTTGAATGGAGACAGTATTGCTATTAAGGAACCAAGTGGGATGGGGGTCGTAGCAGCAGGATCAGGGAAACCCAATGTTGGACTTTAG 2226 44.61 MRLLKVATCNLNQWAMDFDCNVKNIKESIDEAKRAGAVIRLGPELEITGYGCEDHFLELDTVMHAWECLKDILSGPLTDGILCSIGMPVIKDSERYNCQVLCFNRKIIMIRPKMWLANDGNYRELRWFTAWKLKDKLVDFQLPRDISEALSQTSVPFGYGYIQFLDTTVAAEVCEELFTPIPPHAELALNGVEVFMNASGSHHQLRKLDVRLRAFIDATHTRGGVYMYSNHQGCDGGRLYYDGCACVVMNGELVAQGSQFSLKDVEVVVASVDLDAGCFIGVVDVWDTLQSSRFKPQVASLRGSISSFQEQASYKTTVPSVAAPYSLCQPFNLKISLSSPLEINYHCAEEEIAYGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKDIAKGDEQVKADAIRIGRYADGEFPTDSKEFAKRIFYTVFMGSENSSEATRTRAKVLADEIGSWHLNVSIDGIVSALLSLFQTVTGKRPRYKLDGGSNVENLGLQNIQARIRMVLAFMFASLLPWVHGKSGFYLVLGSSNVDEGLRGYLTKYDCSSADLNPIGSISKQDLRAFLRWAATHLGFSSLADIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKIFRCGPVSMFKNLCYRWGSKLTPSEVAEKVKHFFKYYSMNRHKMVVLTPSYHAESYSPDDNRYDLRQFLYNSRWPYQFRKMDNLVKELNGDSIAIKEPSGMGVVAAGSGKPNVGL 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4978097 4983145 + Carg08557-RA Car02g00666 143152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00666 741 Hamap Glutamine-dependent NAD(+) synthetase [nadE]. 4 701 IPR014445 GO:0003952|GO:0005524|GO:0009435
Car02g00666 741 Pfam Carbon-nitrogen hydrolase 5 275 IPR003010 GO:0006807
Car02g00666 741 Pfam NAD synthase 359 621 IPR022310 -
Car02g00666 741 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 4 274 IPR003010 GO:0006807
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00666 K01950 E6.3.5.1, NADSYN1, QNS1, nadE; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] - csv:101207747 1362.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01157 Car-Chr15:9093442 Car02g00666 Car-Chr2:4978097 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g199 . . . . . . . . . . Cma02g00915 . Car02g00666 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00922 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004159 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00666 Car_Chr02 FPKM 79.083542 87.238281 108.40274 114.602791 38.075169 34.056149 39.673382 139.937424 133.005676 146.629333