Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00671 ATGACTTTTCATGGAGGGGATTCGTATACGCAGTCTTGTGTTTCCGCTCAAGGTCGTGGAAGAGATGATCTGTACATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATATACCTCGAGTTGATGAGAAAGTCTTCTATTTCCCTCAGGGGCACATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTTCCTCGAAGATTCTCTGTCGCGTAATTCATATAGATCCGCTGGCAGATCATGAATCGGATGAGGTTTATGCGCAAATAACTTTGTTGCCGGAATCAAATCAAAGTGAGCCTAGAAGTTTAGATCCATGCCCTCCAGAACCTGTCAAACCAGTTGTTCACTCGTTCTGTAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTAACGAGTGCTTACCTCCTTTGGACATGACTCAGGCTACACCAACTCAGGATCTGGTCGCCAAGGATCTTCATGGATATGAGTGGCGATTTAAACATATTTTTAGAGGTCAGCCACGAAGGCACCTGCTAACGACGGGGTGGAGTACATTTGTTACTTCTAAAAGATTAACTGCTGGAGATTCCTTTGTATTCTTGAGGGGAGACAATGGACAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCAACAGCAAAGCAGCATGCCACCATCTGTGATATCGAGTCAGAGCATGCACCTAGGAGTGCTCGCAACTGCATCTCATGCTGTTACAACCCAAACCCGTTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAGTACTTGGAAGCAGTCAATTATAAATTTTCTCTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGGAGATATTTCACCTCATTGGGCCAATTCAAGCTGGAGATCACTAAGGGTTCAATGGGATGAGCAAACATCTATTCTAAGACCTGACAGGGTTTCGCCTTGGGATATAGAACCACTCACGTCTTCAGCGGTCTCAAGTTTGTCTCAACCCGTTTCAAAAAACAAAAGGCCTCGACAATCAACTGAAACTCCAGCTCATGATGGTGCTGATTTGACTAAGTCAGCACATTGGGATTCTGGATTGGCACAATCTCATGATGGTAAACAGTTCGGTAATGCAACTGAGAGCAGATTAGGTGAAAATAATGAACTGTGTCATCATAGTGAGATAGATACTATCAGCAACAGCACATGTGTCTCAAGAACACAGACTGATGGGACCTGGCTATTTTCTACCCAATCCAATGGTTATAAAGACCCAGTAAATGACACAGCACAGGATTATAAAACTGTACCTGTCTGTGGTTGGTCTATTCTGTCAGGACCTTCAAAGGTAAGTGATGATCAAATACTTGATCCCACTGAAAATGGGAGGAAAGGCGAAACTGTAGCTAGTTGTAGATTGTTTGGCATTGATCTCAATCATTTGGCTAAACTTCCTGCTGAGAAAGCATCTTCTCAACCGAGCAGTATGTCTAGTCACACAGATGGGCGCATCAGCACCTTGTCAGTGGCTCAGTCCGAATCAAAATCTGACAACATAGAGGCCTCTATAGATAGAAAGTTAGAGCCATTACAAGCATCTCTGAAGGAGACTCAAAGTAGCTCAACTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGAATGGCCGTGGGTAGGGCAGTAGACTTAACCATCTTAGAAGGCTATGACCAATTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTCTGCACGAGATAAGTGGGAGATTGTATATACTGACGATGAAGGGGATATGATGCTTGTTGGAGACGATCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCTGGCGTCAATAGAAGTTGAAGGGGCAGTAGTAATCCCCGACTCCCCTGCAATTTGA 2070 44.06 MTFHGGDSYTQSCVSAQGRGRDDLYMELWRACAGPLVDIPRVDEKVFYFPQGHMEQLEASTNLELNKRIPLFNLSSKILCRVIHIDPLADHESDEVYAQITLLPESNQSEPRSLDPCPPEPVKPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPPLDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLTAGDSFVFLRGDNGQLRVGVRRRAQQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNYKFSLGMRFNMSFEGEDSPERRFSGTIIGAGDISPHWANSSWRSLRVQWDEQTSILRPDRVSPWDIEPLTSSAVSSLSQPVSKNKRPRQSTETPAHDGADLTKSAHWDSGLAQSHDGKQFGNATESRLGENNELCHHSEIDTISNSTCVSRTQTDGTWLFSTQSNGYKDPVNDTAQDYKTVPVCGWSILSGPSKVSDDQILDPTENGRKGETVASCRLFGIDLNHLAKLPAEKASSQPSSMSSHTDGRISTLSVAQSESKSDNIEASIDRKLEPLQASLKETQSSSTNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLSARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKKMSSGSKQLASIEVEGAVVIPDSPAI 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5010194 5016754 - Carg08552-RA Car02g00671 143157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00671 689 Pfam AUX/IAA family 569 656 IPR033389 -
Car02g00671 689 SMART B3_2 129 231 IPR003340 GO:0003677
Car02g00671 689 MobiDBLite consensus disorder prediction 363 390 - -
Car02g00671 689 Pfam Auxin response factor 255 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car02g00671 689 CDD B3_DNA 127 229 IPR003340 GO:0003677
Car02g00671 689 Gene3D - 573 666 - -
Car02g00671 689 Gene3D - 290 364 - -
Car02g00671 689 Gene3D - 126 231 IPR015300 -
Car02g00671 689 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Car02g00671 689 ProSiteProfiles PB1 domain profile. 578 659 IPR000270 GO:0005515
Car02g00671 689 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 676 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car02g00671 689 SUPERFAMILY CAD & PB1 domains 572 654 - -
Car02g00671 689 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Car02g00671 689 MobiDBLite consensus disorder prediction 565 581 - -
Car02g00671 689 MobiDBLite consensus disorder prediction 519 581 - -
Car02g00671 689 MobiDBLite consensus disorder prediction 521 550 - -
Car02g00671 689 PANTHER AUXIN RESPONSE FACTOR 9 19 676 - -
Car02g00671 689 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00671 Car15g01164 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00671 Car-Chr2:5010194 Car16g00472 Car-Chr16:3011343 0 dispersed
Car04g01924 Car-Chr4:11510297 Car02g00671 Car-Chr2:5010194 0 transposed
Car06g00001 Car-Chr6:31920 Car02g00671 Car-Chr2:5010194 4.78E-78 transposed
Car15g01164 Car-Chr15:9141928 Car02g00671 Car-Chr2:5010194 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2996 PF02309 AUX_IAA 2.60E-12 CL0072 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00671 K14486 - csv:101209208 1186.79