Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00673 ATGGAGGTTTCGCGAGATGATCTGTTGTGCATTAGATACCGGAGTAAGAAGAGGGCTAGAAATAGCAAGAAAGATCATAACAATGGCGGAATCGTCGTCAACAACAATCAAAACCAAAACAACCGCGTTAACAAGAGGACGAGTTTATACGACTTCTTCTGGTCTTTTCTCTTTTCCCTCTCTTGTTTCGTCTGCTTGTTCTATTCCAAGCTCGTCCTTGGTTATGGTGATTCTGGAGATTCTTCTTCTGTGAATAGAAGCGCTATTTGCCCTAGTCCTGGAAATCAGAAGCTAGATGATCACGCCTATTCATCCATAGCAAATGGAAGCAGTTGTATGAACTCTGGATCGTCTGAACTCAATGTGTCAATGAACTGTAATGAATCCTATGTTCATCACAACTATGCAAATTCAAATTACTCACTTTCAGAGTCAAAGGTATTTGAAGTAGCAGTCTTGAGTGCACTTGGATATCCATCTTTAATGTGCAAAGTACAACAGTCAGAGAAGAAACCAAACTCAACAGAACATCAGGAAGGTCCTAGTGGCAGAAGTGCTCACCCCACATATCTTAATTTGGACGAATTTCGCAACATTACGATGAAAGATAAAGAAGGCGACATGCCTGATCAATTAGTTAACATTACTCATCGGCTTGAACCGGATGGATCAGATTACAACTATGCATCTTCATCGAAAGGTGCAAAGGTTGTTGCTCATAACAAGGAAGCAAAAGGAGCATGTAATATATTGGGGAAAGACCATGATAAGTATCTGAGAAACCCTTGTTCTGTGGGAGAAAAGTATGTTGTGATTGAGCTCTCAGAAGAGACCTTAGTCGATGCTGTGATTGAACATTATTCTTCTAATTTCAAGGCATTCAATTTGTCTGGCAGTTTGAGCTATCCAACGGAGACATGGCCTAAATTGGGAAACGTTGTTGCTGCCAATGTAAAACATGCTCAAGTCTTCAAGCTTCCTGAACCAAAATGGGTTAGGTACTTAAAGTTGGATGTTCTTAGTCATTATGGATCAGAGTTTTACTGCACAATGAGTATAGTAGAGGTTTATGGTGTGGATGTCATGGAGAGGATGCTTGAAGATCTCTTTGTCACCTCTTCAGACGAAGAGCCTAATTCAACCGTGTTGACTTCTTCAAATCAGATGTTGAGGTTGCAAAAGTTCTCACGAATGTTAAATAAGTTTCCTAATCCTGTAATTGAAGCTAGACAACAGCTGAACGGTAGACTACCTGGTGACACTGTCCTGAAGATCTTGATGCAGAAGATGAGGTCACTTGAGACTAAATTATCTGTGCTAGAGGATTATATCAAAGAATTGAACCGACGACAAGGGAAACTTCTACCGGATCTCGAAAAAAAGATGGCTAGAATGTCATTGCTTCTGGAGAATACTAAATTAGTTGTCAAGGATCTCATGGTTTGGAAGGAGACAATTGTGAGTAACTACTTTCATGCATTTTCTGACTAG 1491 40.17 MEVSRDDLLCIRYRSKKRARNSKKDHNNGGIVVNNNQNQNNRVNKRTSLYDFFWSFLFSLSCFVCLFYSKLVLGYGDSGDSSSVNRSAICPSPGNQKLDDHAYSSIANGSSCMNSGSSELNVSMNCNESYVHHNYANSNYSLSESKVFEVAVLSALGYPSLMCKVQQSEKKPNSTEHQEGPSGRSAHPTYLNLDEFRNITMKDKEGDMPDQLVNITHRLEPDGSDYNYASSSKGAKVVAHNKEAKGACNILGKDHDKYLRNPCSVGEKYVVIELSEETLVDAVIEHYSSNFKAFNLSGSLSYPTETWPKLGNVVAANVKHAQVFKLPEPKWVRYLKLDVLSHYGSEFYCTMSIVEVYGVDVMERMLEDLFVTSSDEEPNSTVLTSSNQMLRLQKFSRMLNKFPNPVIEARQQLNGRLPGDTVLKILMQKMRSLETKLSVLEDYIKELNRRQGKLLPDLEKKMARMSLLLENTKLVVKDLMVWKETIVSNYFHAFSD 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5023973 5026065 - Carg08550-RA Car02g00673 143159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00673 496 MobiDBLite consensus disorder prediction 167 189 - -
Car02g00673 496 Coils Coil 423 450 - -
Car02g00673 496 Pfam Sad1 / UNC-like C-terminal 240 359 IPR012919 -
Car02g00673 496 ProSiteProfiles SUN domain profile. 205 361 IPR012919 -
Car02g00673 496 MobiDBLite consensus disorder prediction 18 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00673 - - - cmos:111459377 747.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00673 Car-Chr2:5023973 Car09g01108 Car-Chr9:11249625 6.53E-94 dispersed
Car15g01167 Car-Chr15:9158901 Car02g00673 Car-Chr2:5023973 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g155 . . . . . . . . . . Cma02g00925 . Car02g00673 . . . Cpe05g00787 . . . . . . . . . . . . . . . . . . . Csa05g00188 . . . . . . . . . . . Cmo02g00933 . . . . . . . . . . . . . . Cla01g00171 Cam01g0175 Cec01g0173 Cco01g0176 Clacu01g0171 Cmu01g0169 Cre09g2336 Lsi09g00159 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012901 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 0 0 0 1 1 1 1 1 1 0 1 3 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00673 Car_Chr02 FPKM 13.064538 13.350398 2.686703 2.849563 13.547715 13.276229 12.719954 1.818377 1.185475 1.494049