Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00674 ATGATGGAGGAGGGTTTGGTTCCAAGTGGGAGAACGGAGGAAGAAACTGCAGAGGTTTACGATATCAATTATGAGGTTTCTGATGAGGTGGAAAGATGTGGGATATGCATGGATGTCATTGTTGATAGGGGTGTTCTGGACTGCTGCCAGCACTGGTTCTGTTTTGTATGCATTGACAACTGGGCAACTATTACAAACCTTTGTCCACTTTGCCAGAAAGAATTTCAGCTCATCACATGTGTTCCAGTGTATGATACTATTGGGAGCAACAAAGTAGATGAAGAATCATTTAGCAGAAATGACGATTGGTGCTTTGAGGGAAAGAGTAACATCTCTTTTCCATCATACTATATTGACGAGAATGCAGTTATCTGCTTGGATGGTGATGGCTGTAAGATTAGAAATGGATCTGGGTTTACTGAAGGAGAATCTGATCTTGATACCTCAATTGCTTGTGACTCTTGTGATACATGGTATCATGCATTCTGTGTTGATTTTGATCCTGAAGATACAACTGAAAGTACATGGTTATGCCCAAGATGTGGGGCTATTGATCAGGAAACTTCTATCAATGATTCAGTTCTGAAGTTTAACAGTGACTTTGATTCAATGAATGCTTCGGTTCCACAAAGTTTTTCCAGAAAGGTGTCTGTATCCGTTGCTGATACTGGAGAGACAGCATTGGTTGTCTCAATGATTGGAGGAAATCAGGTTAATGAAGTACAAACTGATAACACTTTGTCAACCGATGAAATTGAAAAAAATAAAAAAATTGAAAATTTCATATTGGCTTCGGAAGCTAGTAGGCCAAATGCCACTGTATCACCATTGGTGAATACTCTCGTTCTGCCAGCCCCATCAATGGAAATTACTTCTGCTGTTCCAGCACTTGGAGACAAAGAATTGGAACTTTCTTTGTCACATGATACTCCCATCAGTTTTCATTATGATTCCCCTACAGATGTTGGGTTGAAAACAAGTGCTGATGAAATTAAGACCGAGTCAAGTAGCCTTGAAAGCACCAGAAGTTCTTCAAATATATCCCACCCTGTAAACAAAATGTCTAAAGATGAATTGAGCATGGGTCTTCATCTTGGTTTATCTGTGGGCACATTCTTGTCTGTTGATTACTTGAATGATGAAAATGGGGATCGAAGTGTTCACGTTAAGCCGGAGTTGTTTTCTTCAGAAGGACACTTGTTACAAGTTGATAATATCGCATCTCAAACCACCCCGGAAGCATCTATACTTATTGGTGTAAAGAGGAAACGCACAGATTGCAGTGATCACATCCAGAAGACTGCTGATAATGGAGGTGATAAAGCCAATTCTGATATAAAACTTGTTCTGGGGAAGAATCAACCAGTTCCTTCTAAAAATGATGTGGAGCTAACTGAGCAAGATGATACTGCAAAGAGTTTGGCTAGGCCATTAGTTCCTACAGAAGCCAGCTTGAAGCGAATATCAAGAAAGAAAGGTGTCAATGCTGATATAATGAGTATAGTTCGGGGCCGAAACCGCAGGCCCCCTCCAGGAAGGGGGGCATGCTCAAATTCTAATGATGAAGAGTTGGATGAGCGAGAAAATTTGACTGGTTTGAGAGTCAAAAAGATCATGAGAAGAGCTGGCGAGGATCAGGAATCATCCATGCTAGTTCAGAAACTAAGAAATGAAATAAGAGAAGCAGTTCGCAACAAATGCGCAAAAGATTTTGGGGAAAACCTTTTGGATTCTAAGCTACTTGATGCGTTCAGGGCTGCAATATCAGGCCCTAAAACCGAGACTCAGAAAAGATTATCAGCTTTGGCTGTGAAGGCGAAAAAATCATTATTGCAAAAGGGGAAAATACGTGAGAGTCTGACAAAGAAAATATATGGGGCTACTAATGGAAGAAGGAAGCGTGCTTGGGACCGAGACTGTGAAATTGAATTCTGGAAGCATCGTTGCATAAGAGTGAGAAAGCCCGAAAAGATTGCAACTTTGAAATCCGTCCTTGACCTCTTAAGAAATGGTCCGAGTCCAGATGCAAAACAAGATTCTGAAGGCCAGCCCACAAATCCGATTCTTTCTCGATTATATGTAGCAGATACATCCGTCTTCCCACGGAATAATGACATCAAGCCTCTCTCGGCTTTCAAATCTTCCTCTTCTTTGGATCAGAAGAAAGATCCACTCACAGGGACTAGTAAGGTTCCAACGAAGGCTGGTATTCCTCCTCTAGCAGTAAATGCAGGGAATAGTTGTTCCGTGTCTGCCTCAAAGAGTGCTGCGGGTTCTAGTAAAGGAAATCATAGTGGAAACTCAGAAGCATCAGTTGGTTCTAAGATTAGACCACAGAATACTGTTTCTTCTACATCCAATAATGCAATTGATAAAAGAAAATGGGCCCTAGAAGTTCTTGCTAGGAAAACTGGTGATGGTTCCAGTGCAGCAAACAAAAAGGACGAAGACTTGGCTGTGCTTAAAGGAAATTATCCATTGCTAGCTCAGCTACCAATAGACATGAGACCAAAATTGGAACCCAGTCGCCACAATAAAATTCCCATGTCAGTAAGGCAGGCTCAGCTTTACCGCCTGACGGAGCAGTTCTTGAAGAAAACAAATTTGACGGTCATGCGCAGAACAGCAGAGACAGAGTTGGCCGTTGCAGATGCCATTAACATAGAAAAGGAGGTTGCTGATAGGTCAAACAGCAAAGTTGTATATCTTAATCTTTGTTCTCAGGAGATATTGCATCGCACTGACACTGGCAGATTAAATACAGCAGCAGCAGATTTGGATTCCTCATTCCAGGCAAATGATCAGATTGATGGAACTGAACTAGCCACTCATCCAGAAACAGATCCTGAAGTTCAAGAAGCACTAAGAAATGCAGGTCTTTTATCTGATTCACCTGTGAGTAGCCCTCCACACAGAACTGAAGTCGATGATGATGATGCCCCAATGAAAGACTTGCAAGACGATGAACCTGAAAATGTAATAGAAATGGATGACCATCCAGATTTGGATATCTATGGTGATTTTGAGTACGATCTAGAAGAAGAAAGCTGCTTCACCACGAAAGCTACCACCAAGGTTTTGAAACCACCAGATGAAGGCGAATCAAAATTGAAAGTTATTCTTTCCACCCTAAACACTGAAAGTTCGATTCAGGCGTCAGATGCCGAAAAGTCTGAGGGAACGGAGAGTGTTGAACTTCTGAAGGATGCTTCTTGTTTGCCGAAAAATGAAACTAATGTGGAGGCCGGAACAGCCCCTTCAGAGGGTGAGAATGAAGGCTCTGTTGCTGTTCCTCTGAATAGTACCGAAGTTGAAGAACCTTCCTTGGCAGAATATGAAGAACTCTATGGACCTGACACAGAGCCACAAATTAAGAATCTTCCAGGTGAAACTCCAACAGATGAGCGTTGTGTGCCTACTCCAGCATTTGGTTCCGAGCAGAAAGATTCTTCCAATGATGGAAGTTCTTTGCTAATTCAAGATGGAAATGAATCGGACATTAAACGTGAGGAGAGTGTAAAAGGAGCACCTGCCACCACTGTTTCTCCAATCCCCACTTCTGGAGAGGGTTCTCCCCACAAGAAGGGGAAATCCAATGCTGATGACAATAAGCAGTCTGATAGCAACAACTCTGTAGCTAAGAAGGTCGAAACATACATCAAGGAGCACGTCCGACCTCTGTGCAAGAGTGGGATCATAACACCCGAACAATACAGATGGGCAGTCCAAAAAACCACCGAGAAGGTCATGAAGTACCATTCCAAAGATAAGAATGCAAATTTTCTTATCAAAGAGGGTGAAAAGGTGAAGAAGCTTGCAGAACAGTATGTAGAATCAGCACAGCGGAAGGGCGTTGATTAA 3861 42.19 MMEEGLVPSGRTEEETAEVYDINYEVSDEVERCGICMDVIVDRGVLDCCQHWFCFVCIDNWATITNLCPLCQKEFQLITCVPVYDTIGSNKVDEESFSRNDDWCFEGKSNISFPSYYIDENAVICLDGDGCKIRNGSGFTEGESDLDTSIACDSCDTWYHAFCVDFDPEDTTESTWLCPRCGAIDQETSINDSVLKFNSDFDSMNASVPQSFSRKVSVSVADTGETALVVSMIGGNQVNEVQTDNTLSTDEIEKNKKIENFILASEASRPNATVSPLVNTLVLPAPSMEITSAVPALGDKELELSLSHDTPISFHYDSPTDVGLKTSADEIKTESSSLESTRSSSNISHPVNKMSKDELSMGLHLGLSVGTFLSVDYLNDENGDRSVHVKPELFSSEGHLLQVDNIASQTTPEASILIGVKRKRTDCSDHIQKTADNGGDKANSDIKLVLGKNQPVPSKNDVELTEQDDTAKSLARPLVPTEASLKRISRKKGVNADIMSIVRGRNRRPPPGRGACSNSNDEELDERENLTGLRVKKIMRRAGEDQESSMLVQKLRNEIREAVRNKCAKDFGENLLDSKLLDAFRAAISGPKTETQKRLSALAVKAKKSLLQKGKIRESLTKKIYGATNGRRKRAWDRDCEIEFWKHRCIRVRKPEKIATLKSVLDLLRNGPSPDAKQDSEGQPTNPILSRLYVADTSVFPRNNDIKPLSAFKSSSSLDQKKDPLTGTSKVPTKAGIPPLAVNAGNSCSVSASKSAAGSSKGNHSGNSEASVGSKIRPQNTVSSTSNNAIDKRKWALEVLARKTGDGSSAANKKDEDLAVLKGNYPLLAQLPIDMRPKLEPSRHNKIPMSVRQAQLYRLTEQFLKKTNLTVMRRTAETELAVADAINIEKEVADRSNSKVVYLNLCSQEILHRTDTGRLNTAAADLDSSFQANDQIDGTELATHPETDPEVQEALRNAGLLSDSPVSSPPHRTEVDDDDAPMKDLQDDEPENVIEMDDHPDLDIYGDFEYDLEEESCFTTKATTKVLKPPDEGESKLKVILSTLNTESSIQASDAEKSEGTESVELLKDASCLPKNETNVEAGTAPSEGENEGSVAVPLNSTEVEEPSLAEYEELYGPDTEPQIKNLPGETPTDERCVPTPAFGSEQKDSSNDGSSLLIQDGNESDIKREESVKGAPATTVSPIPTSGEGSPHKKGKSNADDNKQSDSNNSVAKKVETYIKEHVRPLCKSGIITPEQYRWAVQKTTEKVMKYHSKDKNANFLIKEGEKVKKLAEQYVESAQRKGVD 1286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5026800 5041253 - Carg08549-RA Car02g00674 143160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00674 1286 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Car02g00674 1286 MobiDBLite consensus disorder prediction 744 787 - -
Car02g00674 1286 MobiDBLite consensus disorder prediction 710 787 - -
Car02g00674 1286 MobiDBLite consensus disorder prediction 1144 1162 - -
Car02g00674 1286 MobiDBLite consensus disorder prediction 710 727 - -
Car02g00674 1286 ProSiteProfiles Zinc finger PHD-type profile. 65 184 IPR019787 -
Car02g00674 1286 MobiDBLite consensus disorder prediction 1047 1214 - -
Car02g00674 1286 Pfam Ring finger domain 32 72 IPR001841 -
Car02g00674 1286 MobiDBLite consensus disorder prediction 329 352 - -
Car02g00674 1286 MobiDBLite consensus disorder prediction 452 473 - -
Car02g00674 1286 MobiDBLite consensus disorder prediction 960 984 - -
Car02g00674 1286 MobiDBLite consensus disorder prediction 503 526 - -
Car02g00674 1286 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Car02g00674 1286 Pfam PHD-finger 145 181 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00674 - - - cmax:111491518 2454.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00674 Car-Chr2:5026800 Car11g01042 Car-Chr11:7860354 2.20E-14 dispersed
Car02g00674 Car-Chr2:5026800 Car04g01817 Car-Chr4:10540014 3.32E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g153 . . . . . . . . . . Cma02g00926 . Car02g00674 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00934 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009633 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2997 PF00628 PHD 1.60E-08 CL0390 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00674 Car_Chr02 FPKM 9.897268 11.001114 7.209819 8.251701 13.857992 13.156753 12.967597 11.460231 10.408559 11.610997