Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00680 ATGGATTTGATTTACTGTGAGGAGGAGATTGAAAGATTCTATGATACTCGTGAGGAGATCTCCTCTGTTTCTGATTGGGGATCTGATTGCTCTGAGAACTGTAGCACAAGTTTTGGGGATGATAGAGATGTTCCTGAAAGTTTCGGATATGGCGGATGGATAAGAAACTTGGAAAGTGTTTATGAACGCAGAAACAAATTCTTCCAATGGATGAGTTTGGATTTGGAATTGGATAATTCTGACAACAAAGATGAAGAGGAAGGGGTTTCATTTGGGAGGGGTTATCATGATCGAATACTGGAAGATTGTGGAACAGTGTTGCGACTTTCGGGTTCTGAAGGGGAGTTATCTTCAAGTTTTACCATGTCTTCCATGTCGGAAGGAGCTCCAGAGTCATCAGGAAATGTTTCTGTGGAGGAAAGTTATGGTTATACTATCAGGAATTTGGACAATGGGACTGAGTTTATTGTGGATTGTTTCAGTCAAGATGGAATGTTGAACATGTTACGCGAAGTCGGTTCGAACCGATCGTTCAGTTTTGATGAATTCGAGAGAAACATTGGGCAGACTCCCTTGGTTCAGGAACTCTTCCGCAAAAATGTGGAAAAGGCTAGGCCTATAGTCAATGTCAGGAAAGAGGTAAAGAAGGGTTGGTTGAGAAAATTGGGTGCGGTGGCTTGTATAGTTGACAACAGGGAGGGTGCAGTGAAGCACGACAATCTCAATTCATCGTCTAAGGCTGGGATGCAACAAGTTCGTGTTCATCCATATAAAAAGCAAGCCAAGGACTTATCATCCCTTTTTGTGGGACAAGAATTTGAAGCACATAAAGGGCCAATTTCTACAATGAAGTTCAGTTTTGATGGAAGATACTTAGCTACTGCAGGCGAAGATCGCGTCGTGCGTGTATGGCAGGTCATTGAAGATGTGAAAATTGATAATTTCAACCTTCACAATGTTGATCCTTCCTCTATGTACTTCACAACAAATCATTTGTCCAAGCTAGACCCCTTGGATGTGAAAGAGACCGTAGGCAAGACGAAGTTGAAGAGATCATCAAGTACAGCCTGTGTAATTTTTCCACCAAATCTATTTAGGATATTGGAGAAACCGTTGCACGAGTTCTCGGGACACAGCGGTGAGGTCTTGGATCTATCTTGGTCGAAGAAAGGGCTTCTGCTGTCATCTTCTGTCGATAAGACCGTACGTCTTTGGCAGCTGGGATGCGACACGTGCATAAGAGTTTACTGTCATAATAACTACGTAACCTGTGTAAGTTTCAACCCTCTAGATGAAAATCATTTCATAAGTGGCTCGATAGATGGTAAAGTTCGGATCTGGGAAGTTCTTGCTTGTCAAATCGTTGATTATATCGATACTCGTGAGATAGTGAGTGCTGTCTGTTACAGACCGGATGGAAAGGGAGGAATCGTCGGGTCCATGACTGGAAACTGTCGTTTCTATAATATTATAGATAATCGGTTGGAGCTCGATACTCAAATATGCTTAAATGGCAAAAAGAAGTCGCCTGGGAAGAGAATAATTGGTTTTGAGTTTTCTCCTAGCGACCCGAGTAAACTAATGGTCTGCTCTGTTGATTCGCCGGTTCATATAATTTCTGGGGGTGATATCATTTGCAAGTTCAAGGGTCCTCGAAATGGTGGAAACAAGATGTCTGCTTCTTTTACCTCTGATGGAAAGCATATTGTTTCAGCCAGTGAAGAAAACATCTATGTTTGGAACTACAATTGTAAGGACAAAGCGTCTCGGAAAAAGAAAATTTGGTCGTCTGAAAGTTTCTTTTCTCATAATGCGTCGATAGCTATACCTTGGTCTGGTGTGAAAATCACACCCGAACCCCCTGTGTCCCCAACACGAGTTTGCATTACAGCAGAAAGTATCCCTGAAATGGAGCCCAAGTATCCAAATGACGATGGTGATAGCGAACACAAGGTTCCATCATCGTCACCGGATTGCTTCTCTCTAAGTCGCAATCTTTTTCCCGAGTTGCTCAAAGGAACTGCAACTTGGCCAGCGGAGAAACTCCATGATTCCAGCTCAATGACACCTTCACCTTCCATGTGCAAGACTGAGTTCAAGTTTTTGAAGAATGCCTGCCAAAGCATGCTTAGCTCTCCACACATGTGGGGCCTTGTGATCGTTACCGCTGGATGGGATGGACGAATCCGAACATTTCTCAACTATGGCTTACCCGTTCGGTTATGA 2226 43.13 MDLIYCEEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDRDVPESFGYGGWIRNLESVYERRNKFFQWMSLDLELDNSDNKDEEEGVSFGRGYHDRILEDCGTVLRLSGSEGELSSSFTMSSMSEGAPESSGNVSVEESYGYTIRNLDNGTEFIVDCFSQDGMLNMLREVGSNRSFSFDEFERNIGQTPLVQELFRKNVEKARPIVNVRKEVKKGWLRKLGAVACIVDNREGAVKHDNLNSSSKAGMQQVRVHPYKKQAKDLSSLFVGQEFEAHKGPISTMKFSFDGRYLATAGEDRVVRVWQVIEDVKIDNFNLHNVDPSSMYFTTNHLSKLDPLDVKETVGKTKLKRSSSTACVIFPPNLFRILEKPLHEFSGHSGEVLDLSWSKKGLLLSSSVDKTVRLWQLGCDTCIRVYCHNNYVTCVSFNPLDENHFISGSIDGKVRIWEVLACQIVDYIDTREIVSAVCYRPDGKGGIVGSMTGNCRFYNIIDNRLELDTQICLNGKKKSPGKRIIGFEFSPSDPSKLMVCSVDSPVHIISGGDIICKFKGPRNGGNKMSASFTSDGKHIVSASEENIYVWNYNCKDKASRKKKIWSSESFFSHNASIAIPWSGVKITPEPPVSPTRVCITAESIPEMEPKYPNDDGDSEHKVPSSSPDCFSLSRNLFPELLKGTATWPAEKLHDSSSMTPSPSMCKTEFKFLKNACQSMLSSPHMWGLVIVTAGWDGRIRTFLNYGLPVRL 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5067072 5071556 - Carg08543-RA Car02g00680 143166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00680 741 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 449 IPR001680 GO:0005515
Car02g00680 741 MobiDBLite consensus disorder prediction 638 652 - -
Car02g00680 741 Pfam WD domain, G-beta repeat 271 304 IPR001680 GO:0005515
Car02g00680 741 Pfam WD domain, G-beta repeat 411 447 IPR001680 GO:0005515
Car02g00680 741 Pfam WD domain, G-beta repeat 370 405 IPR001680 GO:0005515
Car02g00680 741 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 306 IPR001680 GO:0005515
Car02g00680 741 MobiDBLite consensus disorder prediction 638 657 - -
Car02g00680 741 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 306 - -
Car02g00680 741 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 375 407 - -
Car02g00680 741 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 407 IPR001680 GO:0005515
Car02g00680 741 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00680 - - - csv:101204856 1301.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00680 Car15g01175 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00680 Car-Chr2:5067072 Car02g00936 Car-Chr2:6626209 0 dispersed
Car01g01021 Car-Chr1:9728856 Car02g00680 Car-Chr2:5067072 1.38E-129 transposed
Car15g01175 Car-Chr15:9182962 Car02g00680 Car-Chr2:5067072 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g208 . . . . . . . . . . Cma02g00931 Cma15g01305 Car02g00680 Car15g01175 . . Cpe05g00780 . . . . . . . . . . . . . . . . . . . Csa05g00028 Chy09g01316 . . . Bda07g01942 . . . . . . Cmo02g00940 Cmo15g01372 . . . . . . Bhi12g00103 . . . . . Lcy12g1541 Cla01g00160 Cam01g0166 Cec01g0164 Cco01g0167 Clacu01g0162 Cmu01g0161 Cre09g2345 Lsi09g00152 . . Cme09g01865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009425 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 4 3 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00680 Car_Chr02 FPKM 26.563063 31.913393 32.292217 32.333538 20.336956 23.654011 22.641691 31.234552 30.137787 37.543381