Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car02g00760	ATGTCCGAACCACCTCCCTCCGTCTTCGATCATGATCCCTCCCCCTCCGCCGCCAAGCTCCGTAAGATCCCTCCCATCCCTATTCGCCGCGATACCAAACCCAATGCCGGAGACTCTGATCCCGATCAAGAACATGACCACGCCGAGGATCATCCTCCTCAACCTGGCGATTCCTCCATCATAATGGCCTCCTCCCTCGGGTTGAACCACATTCGGACGCGGTCTGCTCCTCTTCCGCTTCGGACCTGTGCCGTTGGTACGCCCTCCAATTTGGGCGATGATTCTAGGAATAATGTCGCCGACGGGAGTGAGTCGGAGCCAAAAAATTCCTCCTCTGAACAGGGGACAAACATTCCGTGGAGTCAACCGAACTCTTTAAGATATCCGTCGGCTCTGAATCATGATATTGAGGGTCATCATGCAGCATATACAAAGGAAATTCAGTCTCCACGATTCCGTGCAATACTGCGTGTTACTAGTGGAAGAAGGAAGAGAACCCCAGATATCAAAAGCTTCTCTCACGAGCTCAATTCCAAAGGGGTTCGCCCTTTTCCAGTTTGGAAGCCTCGGGCATTTGGACATTTGGAAGAGATCATGGTGGCTATCAGAGCAAAATTTGACAGGTTGAAGGATGATGTTAACTACGAACTGGGCATTTTTGCTGGAGATCTCGTAGATATACTTGAAAAGGCAGATCGATCTATGCCTGAACTTAAGGAGGGTTTGGAGGATTTGTTGGTGGTTGCTCGGAAATGTGCGACAATGTCACCTACTGAATTCTGGACAAAAGGTGAAGGCATTGTCCAGAATCTAGATGACCGGCGCCAGGAGCTGTCATTAGGAATTCTTAAGCAAGCCCACACCCGCCTTCTTTTCATCCTGACACGATGTACGCGGCTTATTCAGTTCAGAAAGGAGAGTGGTTATGAAGATGAGCACATTTTGGGTCTTCATCAGCTTAGTGATCTAGGAATTTATCCAGAGAAAATCAGGCAGCTCGAACAACTTGAGTTTGGTGATCCATTGACTGGGAAAGAAGATATTGCGAAGCAGCTGAAGTTAGTTGGGAAGGATCAAGCCCATCGCATTGTGAAGCAAGATTCAGAACAAACTTTTAGTAATAGTGCTGGAAATGTTAGTCTGGACTCTGCCGTAAGTTTTGATTCATCTACAAGCATGTATAGGATGGCATCCTGGAAAAAGCTACCATCAGCAGCTGAGAAGAACCGGAAAGAGTCTGACCCTGTCGATACAACACATGCCAAGGATAAAATTGAGGTGTTGCATGTACATGAAGCTAAAACTGGGAGCAATGAGAAATTAGATATCCCATCTAGTCATATTGAGCATTCAGAAGCACCCCCTAAAGAACAAAAAGTATCTTGGGGAATATGGGGTTATCATCAAAATGCCAATTTTGAGAGTTTGATGATCTGTCGGATTTGTGAGGTTGAAATTCCGACTATTCATGTTGAGGTGCATTCTCGAATTTGTACAATTGCCGATAGGTGTGATTTGAAAGGTTTAACTGTGAATGAGCGCCTTGAGCGGGTTGCTAGAGCTCTTGAAAAGATACTGGAGTCTTGGACGCCTAAAAGTACACCAAGAAGTAGCGATACTTCCTGTGCAAATTTTGATACTGTTAAGGTTTCTACATCAAATATGCAAGAAGAGATTTTTGAGTTGTCATCTAAAGGAATCAGTTTGTCATGTCGAAACTCTGAAGAGCTGCTTGATTCCCTCCCTGTTACTGGAAACTCTTCCTTTGTGGAAAGTCAGGATATTTTTCAGGATCAATCATACAATCGACCATTTATTTTCACACCAGAACACAGTACAAAATCAATGTCAGCTGGAACTCTAACACCAAGATCACCTCTTTTAACACCCAGATCCAGTCAGATTGAATTGTTGTTGCATGGGCGAAGAGCAATATCTGAACTTGAAAATTATCAGCAGATATACAAATTGTTGGATATTGTTCGTTCCATTGCAAACGTTAACAACTCTGGCTATGGTGCATTGGAGTGTATGCTCGATCGATTAGAAGACCTTAAATATGCAATCCAGGATAGGAAGGTCGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTCTTGCAGGAAAAATACGTACAACTTTGTGGGCAAATAGAAGATGATAAAGTAGACTCTTCAATTGGCATAGTTGATGAAGAGAGTTCAGTGGAAGATGATACTGTTCGTAGTCTGCGTGCAAGTCCGGTTAACCCATGTTCAAAAGATCGAACATCTATTGAAGATTTTGAAATAATCAAACCAATTAGTAGAGGGGCCTATGGCCGAGTTTTCCTTGCCAGAAAACGAGCAACTGGAGACTTATTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGCAATATCCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAATACTTAAATGGTGGTGATATTTACTCCTTACTGAGAAACCTAGGGTGCTTAGATGAAGATATGGCTCGGGTTTATATCGCTGAAATTGTTCTTGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGACAACTTATTGATTGGTCAAGATGGTCACATTAAGTTGACAGATTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATAAATGGAACTGTTCCACTTGGAGACAATGGACCTACATCTCAATCTTTGTCAAAAAGAGAACACCGACAAAAGCATTCAGTTGTTGGTACTCCAGATTATTTGGCCCCTGAGATACTTCTGGGCATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGACTACCGCCGTTCAATGCAGAAAGTCCACAGCTAATTTTTGATAATATCATTAATAGAGACATACCATGGCCCAAGGTACCGGACGAGATGAGTTATGAAGCCCAGGATTTGATTGACAAATTGCTGACTGAAAATTCAGTTCAAAGACTGGGAGCTACAGGAGCCAGAGAGGTGAAGCAACATCCTTTCTTCAAGGATATTAATTGGGAAACACTTGCAAGGCAGAAGGCCATGTTTATACCATCAGCAGAGCCACATGATACAAGTTATTTCATGAGTCGATATATATGGAATCCAGAAGACGAGGATTTTAATGGTGCTAGTGACTTTGATGATCATGATTTGACAGATACCAGCAGTAGTTCATTTAGCAACCTACAAGATGAAGATGGAGACGAATGTGGTAGTTTGGCTGACTTCTGTACACCAGCCCTTTCTGTGAAGTACTCGTTCAGCAATTTCTCTTTCAAGAATTTATCACAGTTGGCTTCCATCAATTATGATTTGGTGGTGAAGAGCAGCCAAAACTCACCAGATATAACCAGACCATCCTTTCCTTGA	3528	42.94	MSEPPPSVFDHDPSPSAAKLRKIPPIPIRRDTKPNAGDSDPDQEHDHAEDHPPQPGDSSIIMASSLGLNHIRTRSAPLPLRTCAVGTPSNLGDDSRNNVADGSESEPKNSSSEQGTNIPWSQPNSLRYPSALNHDIEGHHAAYTKEIQSPRFRAILRVTSGRRKRTPDIKSFSHELNSKGVRPFPVWKPRAFGHLEEIMVAIRAKFDRLKDDVNYELGIFAGDLVDILEKADRSMPELKEGLEDLLVVARKCATMSPTEFWTKGEGIVQNLDDRRQELSLGILKQAHTRLLFILTRCTRLIQFRKESGYEDEHILGLHQLSDLGIYPEKIRQLEQLEFGDPLTGKEDIAKQLKLVGKDQAHRIVKQDSEQTFSNSAGNVSLDSAVSFDSSTSMYRMASWKKLPSAAEKNRKESDPVDTTHAKDKIEVLHVHEAKTGSNEKLDIPSSHIEHSEAPPKEQKVSWGIWGYHQNANFESLMICRICEVEIPTIHVEVHSRICTIADRCDLKGLTVNERLERVARALEKILESWTPKSTPRSSDTSCANFDTVKVSTSNMQEEIFELSSKGISLSCRNSEELLDSLPVTGNSSFVESQDIFQDQSYNRPFIFTPEHSTKSMSAGTLTPRSPLLTPRSSQIELLLHGRRAISELENYQQIYKLLDIVRSIANVNNSGYGALECMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVQLCGQIEDDKVDSSIGIVDEESSVEDDTVRSLRASPVNPCSKDRTSIEDFEIIKPISRGAYGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARVYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKIGLINSTDDFSGPSINGTVPLGDNGPTSQSLSKREHRQKHSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGLPPFNAESPQLIFDNIINRDIPWPKVPDEMSYEAQDLIDKLLTENSVQRLGATGAREVKQHPFFKDINWETLARQKAMFIPSAEPHDTSYFMSRYIWNPEDEDFNGASDFDDHDLTDTSSSSFSNLQDEDGDECGSLADFCTPALSVKYSFSNFSFKNLSQLASINYDLVVKSSQNSPDITRPSFP	1175

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	5550539	5562648	+	Carg08462-RA	Car02g00760	143246

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car02g00760	1175	MobiDBLite	consensus disorder prediction	926	940	-	-
	Car02g00760	1175	MobiDBLite	consensus disorder prediction	88	126	-	-
	Car02g00760	1175	ProSiteProfiles	Protein kinase domain profile.	765	1053	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car02g00760	1175	MobiDBLite	consensus disorder prediction	82	126	-	-
	Car02g00760	1175	MobiDBLite	consensus disorder prediction	24	53	-	-
	Car02g00760	1175	MobiDBLite	consensus disorder prediction	1	61	-	-
	Car02g00760	1175	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	884	896	IPR008271	GO:0004672\|GO:0006468
	Car02g00760	1175	ProSiteProfiles	AGC-kinase C-terminal domain profile.	1054	1155	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Car02g00760	1175	MobiDBLite	consensus disorder prediction	926	948	-	-
	Car02g00760	1175	Pfam	Protein kinase domain	765	1053	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Car02g00760	Car15g01249	CST

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Car02g00760	Car-Chr2:5550539	Car08g00953	Car-Chr8:6369726	9.15E-86	dispersed
	Car01g00680	Car-Chr1:4039881	Car02g00760	Car-Chr2:5550539	0	transposed
	Car15g01249	Car-Chr15:9748482	Car02g00760	Car-Chr2:5550539	0	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	88661	PF00069	Pkinase	7.60E-64	CL0016	Car	PK

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car02g00760	-		-	csv:101210442	1976.06