Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00790 ATGGATTTTCCCGATGCTTCTTCTTCTTCTAATTCCGAATTCTTCACTTCCCGCCGATCCAATTTCTCCGACGAGGAGCTTCTCCTGGCATCCCGACACCCCAAGAAGAGGGCCGGAAGAAAGAAATTCAAGGAAACTCGCCACCCTGTTTACCGTGGTGTCCGCCGCCGCAATTCCGGCAAGTGGGTCTGCGAGGTCAGAGAGCCCAATAAAAAGACTAGGATTTGGCTCGGTACTTTCCCCACCGCCGAGATGGCTGCTCGGGCTCATGATGTAGCCGCCATCGCCCTCCGCGGTCGCTCTGCTTGTCTTAATTTTGCCGACTCTGTTTCCGCGCTTCCTCGCCCGGCTTCTCTTGATCCCAAGGATATTCAGAGGGCCGCGGCTGAGGCTGCAGAGGCCTTCCGCCCGCCGGAGACTGCCCCGGCGGAGGATATGTTTTGTTTCGATAACGATGAGATGCCCGGGTTTCTGGCGGACATGGCGGAGGCAATGCTGCTGCCGCCGCCCAACTGTGTGGCGACTGACCACGACGACTATGGCCCGAATTCCATGGATTTTGATGCCGACATGTCGTTGTGGAGTTACTCAATTTGA 597 56.62 MDFPDASSSSNSEFFTSRRSNFSDEELLLASRHPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSVSALPRPASLDPKDIQRAAAEAAEAFRPPETAPAEDMFCFDNDEMPGFLADMAEAMLLPPPNCVATDHDDYGPNSMDFDADMSLWSYSI 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5751435 5752031 + Carg08431-RA Car02g00790 143276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00790 198 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Car02g00790 198 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Car02g00790 198 MobiDBLite consensus disorder prediction 26 47 - -
Car02g00790 198 SUPERFAMILY DNA-binding domain 50 109 IPR016177 GO:0003677
Car02g00790 198 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 9 144 - -
Car02g00790 198 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 153 198 - -
Car02g00790 198 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Car02g00790 198 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Car02g00790 198 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Car02g00790 198 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Car02g00790 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 144 IPR045277 GO:0003700
Car02g00790 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 153 198 IPR045277 GO:0003700
Car02g00790 198 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00790 Car-Chr2:5751435 Car02g01244 Car-Chr2:8412622 4.40E-60 dispersed
Car16g00132 Car-Chr16:761641 Car02g00790 Car-Chr2:5751435 3.22E-77 wgd
Car02g00790 Car-Chr2:5751435 Car02g01243 Car-Chr2:8409741 1.28E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3005 PF00847 AP2 9.00E-16 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00790 - - csv:101207745 282.337