Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00813 ATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACATAGTCACCAAGAAGGAGTTGGCTCCACGACCCTCTGATCGCAAAGGAAAATCAAGCAAAAGGGTTCTTTTTGTCCGGAGCTTGATCCGGGAAGTTGCTGGTTTCGCCCCATATGAAAAGAGAATCACTGAGCTTCTTAAAGTTGGTAAAGACAAGCGTGCTTTGAAGGTAGCCAAAAGAAAGCTTGGAACTCACAAGAGGGCCAAGAAGAAGCGTGAGGAGATGTCCAGTGTGCTAAGAAAGATGAGGGCCGGTGGAGGTGGTGAGAAGAAGAAGTGA 333 48.35 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5889279 5890440 - Carg08408-RA Car02g00813 143299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00813 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Car02g00813 110 MobiDBLite consensus disorder prediction 87 110 - -
Car02g00813 110 Gene3D 60S ribosomal protein L36 1 105 IPR038097 -
Car02g00813 110 MobiDBLite consensus disorder prediction 79 110 - -
Car02g00813 110 PANTHER 60S RIBOSOMAL PROTEIN L36-1-RELATED 1 110 - -
Car02g00813 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Car02g00813 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 110 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00813 K02920 RP-L36e, RPL36; large subunit ribosomal protein L36e - csv:101219927 214.542
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00813 Car16g00106 CCT
Car02g00813 Car18g01162 CCT
Car02g00813 Car16g00106 ECH
Car02g00813 Car18g01162 ECH
Car02g00813 Car15g01006 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01006 Car-Chr15:7854822 Car02g00813 Car-Chr2:5889279 1.24E-72 wgd
Car16g00106 Car-Chr16:649859 Car02g00813 Car-Chr2:5889279 2.84E-73 wgd
Car18g01162 Car-Chr18:11392064 Car02g00813 Car-Chr2:5889279 9.47E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g708 Blo06g01130 Blo15g00170 Bda05g00080 . Bpe03g00281 Bpe07g00935 Bma10g01229 . . Cmo18g01278 Cma02g01070 Cma15g01095 Car02g00813 Car15g01006 Sed05g0499 Cpe05g00649 . Bhi01g01300 Tan01g0235 Cmetu09g0361 . . Mch10g0146 . Cla01g00437 Cam01g0459 Cec01g0448 Cco01g0471 Clacu01g0458 Cmu01g0437 . Cone1ag1164 Cone5ag0874 . . . . . Cme06g01013 Blo07g00401 Blo09g00102 Bda06g00686 . . . Bma08g00300 . . Cmo02g01088 Cmo15g01153 . . Car16g00106 Car18g01162 Cpe09g00083 Cpe13g00256 . . . . . . . Cla05g00891 . . . . . . . Csa03g01724 Chy06g00955 Cme09g01555
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001254 4 4 4 4 3 1 4 1 1 1 2 1 2 2 2 3 1 4 3 1 2 2 0 3 3 1 2 4 4 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00813 Car_Chr02 FPKM 7.405077 7.918068 12.999627 10.574167 15.89998 12.053741 18.768337 11.00139 13.17031 15.051882