Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00817 ATGTGGTTATTCAGAAGAAAAGGGCCCTCCGGGTTTTCGTCTTCTTCCACCGCCGAGGAAGTTACAAACGGAATCGATGGCACAGGACTCACCGCCATTGTTACAGGAGCGTCGAGTGGTATTGGCTCTGAAACTGCGCGTGTTCTTGCATTACGCGGAGTCCATGTTGTTATGGGTATTAGGAACTTAGAAGCTGGTAGAAATGTAAGAGAAACCATCATCAAGGAGAACCCCTCTGCAAAAATTGATGCCATGGAGTTGGATCTTAGCTCCATGGCTTCTGTGAGAAAATTTGCCTCAAATTATCAGTCAGCTGGGCTTCCACTTAATATCCTCATTAATAATGCAGGAGTCATGGCTGCCCCTTTTGGACTTTCAAAAGATAACATAGAACTGCAATTTGCAACAAATCACTTAGGTCATTTCCTCTTGACAGATCTACTGTTGGATAGTATGAAGAAAACTGCCATTAAAAGTAAAAAAGAAGGAAGAATTGTTAACGTCTCCTCAGAAGCTCACCGTTATACATATCCTGAAGGCATCCGATTTGACGGGATTAACGATGAATCAAGGTACAAAAAAATGCTAGCTTATGGCCAATCAAAGTTATGTAATGTTCTGCATGCCAATGAACTTACAAGACGTTTCAAGGAAGAAGGAGTAAACATAACTGCAAACTCACTTCACCCAGGAATAATTGCCACAAATCTTTTCCGCCATTTCAGTTTTGGCAATGGTATTGCGAACACTGTCGGCAAACTCGTATTCAAAAATGTTCAACAGGGTCCGAATTTGCAGGGTGCAGCAACAACCTGCTATGTAGCATTGCATCCACAAGTGAAGGGAGTGAGTGGTGAATATTTTCTGAATAGTAACCTAAACAAGGCAAGTCAACATGGGCAGGATGTTGATCTGGCTAAGAAACTTTGGGATTTTACCACTAACTTACTCAAATAA 957 41.8 MWLFRRKGPSGFSSSSTAEEVTNGIDGTGLTAIVTGASSGIGSETARVLALRGVHVVMGIRNLEAGRNVRETIIKENPSAKIDAMELDLSSMASVRKFASNYQSAGLPLNILINNAGVMAAPFGLSKDNIELQFATNHLGHFLLTDLLLDSMKKTAIKSKKEGRIVNVSSEAHRYTYPEGIRFDGINDESRYKKMLAYGQSKLCNVLHANELTRRFKEEGVNITANSLHPGIIATNLFRHFSFGNGIANTVGKLVFKNVQQGPNLQGAATTCYVALHPQVKGVSGEYFLNSNLNKASQHGQDVDLAKKLWDFTTNLLK 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5908223 5910940 - Carg08404-RA Car02g00817 143303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00817 318 Pfam short chain dehydrogenase 31 180 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00817 - - - csv:101214020 546.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00817 Car-Chr2:5908223 Car16g00535 Car-Chr16:3385627 1.37E-154 dispersed
Car09g00792 Car-Chr9:4661268 Car02g00817 Car-Chr2:5908223 9.85E-32 dispersed
Car09g01013 Car-Chr9:6771994 Car02g00817 Car-Chr2:5908223 2.64E-24 dispersed
Car13g00938 Car-Chr13:9588325 Car02g00817 Car-Chr2:5908223 4.47E-35 dispersed
Car20g00163 Car-Chr20:906031 Car02g00817 Car-Chr2:5908223 1.09E-34 dispersed
Car15g00999 Car-Chr15:7808532 Car02g00817 Car-Chr2:5908223 5.31E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g726 . . . . . . . . . . . . Car02g00817 . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01374 . . . . . . . . . . . . . . . . . Cpe13g00109 . . . . . . . . . . . . . . Lsi09g00092 . . Cme09g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00817 Car_Chr02 FPKM 0.551971 0.0 1.565823 1.834321 1.452191 0.565776 1.652858 121.084076 132.08606 109.587036