Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00831 ATGGAACAGAAGCACATTTTTCTGTCTGCTTTGGGCGTTGGGGTTGGAGTTGGGGTTGGCCTTGGATTGAGCTCTGGACAAGCTGTTGGCAAATGGGTTGCTGGGAATACCTCTTCTGATGAGATTACAGGGCAGAAGATTGAACAGGAGCTCATCAGGCAGCTCGTTGATGGCAGAAATAGCGATGTTACTTTTGATGAGTTTCCTTATTATCTTTGCGAGAGGACGAGGATGCTCTTGATGAGTGCTGCATATGTTCGTTTGAAGCATTGTGACATCTCCAAACATACCAGAAATCTTTCACCAGCGAGTCGGGCTATTTTGCTTTCAGGACCGACAGAACTGTACCACCAAATGCTTGCCAAGGCTCTGGCGCAACACTTCGAGTCGAAGTTGCTGTTGTTAGACGTTTCTGACTTTTCTCTAAAGATGCAGAGCAAATATGGCTGTGCCAAGAAAGAACCGTCATTTAAGAGGTCCATCTCTGAGGCGGCGTTGGAGCGTGTGTCTAGCGTTTGGGGTTCCTTCTCGATTCTTCCTACGAGTGGAAATACTAGAGGCAATTTAAGAAGGCAAAGCAGTACTACAGACATTCAATCAAGAAGTACCGATGGCCCGTCCAATCCTCCAAAACTTCGGAGAAATGCTTCTACTGCGTCTGATATTAGTAGCATCTCATCGAATTGTGCTTCAACAAATTCAGCTTCTGTCAAGCGCACAAATAGTTGGTGTTTTGATGAGAAACTTTTTCTTCAGTCTCTTTATAAGGTCTTGGTGTCGGTATCCGAAACCAATTCCGTAATTTTGTATCTACGAGATGTCGAGAGACTTCTTCTTCAGTCACAGAGGCTGTACAATCTGTTCCATAGATTTCTGAACAAGCTCTCTGGATCAGTTCTAGTACTCGGTTCAAGAATGGTAGACTTGGAAAATGATTGCGGAGATGTCGACGACAGACTGACCTGTTTATTTCGGTATAGTGTCGAAATTCGACCCCCTGAAGACGAGAATCATCTTGTCAGCTGGAAAGCTCAATTGGAAGAGGACATGAAGATGATTCAATTCCAAGATAACAAAAACCACATTGCTGAAGTTCTTGCTGCAAATGATCTTGAATGTGATGATCTTGGATCAATCTGCCATGCAGACACCATGGTTCTTAGTAATTATATCGAAGAAATCGTCGTATCGGCGATATCCTATCATTTAATGAACAACAGGGATCCCGAATACCGAAACGGAAAACTTCTGATATCTTCCAAGAGTTTATCCCATGGATTGAGTATATTCCAGGAAGGAAATAATGAAGGGAAAGACACTCTAAAGCTAGAGACGAATGCAGAATCATCGAAGGAAGCCCCGGGGGACGATGCTGTCGGGGCGAAGAACGAATCAAAATCTGAAAATCCAGCTGCAGAAAACAGAGGAGAGGCAGATAAATCTGTACCTATAGAAGTCCTTCCCGACAACGAATTTGAGAAGCGTATAAGACCGGAAGTTATCCCTGCAAACGAAATCGGGGTGACATTTGCAGACATAGGTTCCTTGGATGAGATCAAAGAGTCCTTACAGGAATTAGTCATGCTTCCTCTTCGACGACCAGACCTCTTTAAAGGCGGGCTTCTCAAACCTTGTAGGGGTATTTTGCTTTTCGGCCCTCCTGGTACGGGTAAAACGATGCTGGCGAAGGCCATTGCTAATGAAGCTGGAGCAAGTTTCATCAATGTTTCGATGTCCACAATCACTTCTAAATGGTTTGGGGAAGACGAAAAGAACGTTCGGGCACTGTTTACGCTTGCAGCAAAGGTCTCCCCTACAATTATTTTTGTCGATGAAGTCGATAGCATGCTTGGCCAGCGGACTAGAGTGGGAGAGCATGAGGCCATGCGGAAGATTAAAAATGAGTTCATGTCACACTGGGATGGATTGCTGACTAGAAATGATGAGAGAATACTAGTTCTTGCTGCAACCAACAGGCCATTTGACCTCGATGAAGCCATCATTCGTCGGTTCGAGCGTAGGTAG 2025 44.69 MEQKHIFLSALGVGVGVGVGLGLSSGQAVGKWVAGNTSSDEITGQKIEQELIRQLVDGRNSDVTFDEFPYYLCERTRMLLMSAAYVRLKHCDISKHTRNLSPASRAILLSGPTELYHQMLAKALAQHFESKLLLLDVSDFSLKMQSKYGCAKKEPSFKRSISEAALERVSSVWGSFSILPTSGNTRGNLRRQSSTTDIQSRSTDGPSNPPKLRRNASTASDISSISSNCASTNSASVKRTNSWCFDEKLFLQSLYKVLVSVSETNSVILYLRDVERLLLQSQRLYNLFHRFLNKLSGSVLVLGSRMVDLENDCGDVDDRLTCLFRYSVEIRPPEDENHLVSWKAQLEEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHADTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSLSHGLSIFQEGNNEGKDTLKLETNAESSKEAPGDDAVGAKNESKSENPAAENRGEADKSVPIEVLPDNEFEKRIRPEVIPANEIGVTFADIGSLDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERR 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5984267 5990252 - Carg08390-RA Car02g00831 143317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00831 674 Pfam ATPase family associated with various cellular activities (AAA) 548 674 IPR003959 GO:0005524|GO:0016887
Car02g00831 674 SMART AAA_5 544 673 IPR003593 -
Car02g00831 674 CDD AAA 546 674 - -
Car02g00831 674 MobiDBLite consensus disorder prediction 446 482 - -
Car02g00831 674 MobiDBLite consensus disorder prediction 183 229 - -
Car02g00831 674 ProSitePatterns AAA-protein family signature. 651 670 IPR003960 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00831 - - - csv:101216426 1172.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00831 Car-Chr2:5984267 Car16g00512 Car-Chr16:3275096 0 dispersed
Car02g00831 Car-Chr2:5984267 Car15g00982 Car-Chr15:7544917 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g809 Blo06g01180 Blo15g00212 . . . . . . . . Cma02g01088 . Car02g00831 . . . . . . . . . . . . . . . . . . . Cone5ag0903 . . . . . . . . Bda06g00733 . . Bpe12g00487 . . . Cmo02g01109 . . . . . . . Bhi12g00765 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00831 Car_Chr02 FPKM 8.466847 7.521775 3.207186 3.666959 16.669615 15.735982 20.594912 2.363137 2.208172 2.346149